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Chpf2 Gene Detail
Summary
  • Symbol
    Chpf2
  • Name
    chondroitin polymerizing factor 2
  • Synonyms
    2010209O12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917522
    NCBI Gene: 100910
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:24586741-24594556 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 11.93 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    54 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917522
protein coding gene Chr5:24585991-24594556 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029351
protein coding gene Chr5:22334401-22342098 (+)
A/J MGP_AJ_G0029317
protein coding gene Chr5:21561367-21569219 (+)
AKR/J MGP_AKRJ_G0029268
protein coding gene Chr5:22426302-22434154 (+)
BALB/cJ MGP_BALBcJ_G0029328
protein coding gene Chr5:22077169-22084984 (+)
C3H/HeJ MGP_C3HHeJ_G0029048
protein coding gene Chr5:22545419-22553271 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029781
protein coding gene Chr5:23834839-23842654 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027019
protein coding gene Chr5:19502803-19510935 (+)
CAST/EiJ MGP_CASTEiJ_G0028460
protein coding gene Chr5:21731313-21738927 (+)
CBA/J MGP_CBAJ_G0029015
protein coding gene Chr5:24220584-24228436 (+)
DBA/2J MGP_DBA2J_G0029166
protein coding gene Chr5:21854249-21862101 (+)
FVB/NJ MGP_FVBNJ_G0029124
protein coding gene Chr5:21229782-21237597 (+)
LP/J MGP_LPJ_G0029250
protein coding gene Chr5:22732002-22739658 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029153
protein coding gene Chr5:25333799-25341495 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029815
protein coding gene Chr5:22082650-22090224 (+)
PWK/PhJ MGP_PWKPhJ_G0028184
protein coding gene Chr5:20936961-20944575 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028015
protein coding gene Chr5:21426125-21433822 (+)
WSB/EiJ MGP_WSBEiJ_G0028540
protein coding gene Chr5:22151991-22159686 (+)



Homology
more
  • Human Ortholog
    CHPF2, chondroitin polymerizing factor 2
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CHPF2, chondroitin polymerizing factor 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    chPF-2, ChSy-3, CSGlcAT, CSGLCA-T
  • Links
    NCBI Gene ID: 54480
    neXtProt AC: NX_Q9P2E5
    UniProt: Q9P2E5

  • Chr Location
    7q36.1; chr7:151232489-151238827 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038181 Ensembl Gene Model | MGI Sequence Detail 7816 C57BL/6J ±  kb
transcript ENSMUST00000088295 Ensembl | MGI Sequence Detail 5371 Not Applicable  
polypeptide ENSMUSP00000085633 Ensembl | MGI Sequence Detail 768 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • EC
  • InterPro Domains
    IPR008428 Chondroitin N-acetylgalactosaminyltransferase
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 3
Other
Accession IDs
less
MGI:2141145
References
more
  • Summaries
    All 30
    Diseases 1
    Phenotypes 13
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:161922 Tang T, et al., A mouse knockout library for secreted and transmembrane proteins. Nat Biotechnol. 2010 Jul;28(7):749-55

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/14/2019
MGI 6.14
The Jackson Laboratory