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Gtf3c5
Gene Detail
 Symbol
Name
ID
Gtf3c5
general transcription factor IIIC, polypeptide 5
MGI:1917489
Synonyms 2700084A09Rik, TFiiiC2-63, TFIIIC63, TFIIICepsilon
Feature Type protein coding gene
Genetic Map
Chromosome 2
19.38 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr2:28566311-28583751 bp, - strand
From VEGA annotation of GRCm38

  17441 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:40806  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Gtf3c5

Human
homologs
Human Homolog GTF3C5, general transcription factor IIIC, polypeptide 5, 63kDa
NCBI Gene ID 9328
neXtProt AC  NX_Q9Y5Q8
Human Synonyms  TFiiiC2-63, TFIIIC63, TFIIICepsilon
Human Chr (Location)  9q34; chr9:133030675-133058503 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Gtf3c5 interacts with 108 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process skeletal muscle cell differentiation, transcription, DNA-templated
Component nucleus, transcription factor TFIIIC complex
Function DNA binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (116)    Tissues (109)    Images (2)
Theiler Stages: 2, 3, 4, 5, 22, 23, 28
Assay TypeResults
RNA in situ 108
RT-PCR 8
cDNA source data(68)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(69) cDNA(68) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000011674 (Evidence)
Ensembl Gene ModelENSMUSG00000026816 (Evidence)
Entrez Gene70239 (Evidence)
UniGene274120
DFCITC1575674
DoTSDT.110650112, DT.94274817, DT.94274830
NIA Mouse Gene IndexU022450
Consensus CDS ProjectCCDS15842.1, CCDS71012.1
International Mouse Knockout Project StatusGtf3c5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000011674 VEGA Gene Model | MGI Sequence Detail 17441 C57BL/6J ±  kb
transcript OTTMUST00000027332 VEGA | MGI Sequence Detail 2667 Not Applicable 
polypeptide OTTMUSP00000012431 VEGA | MGI Sequence Detail 520 Not Applicable 

For the selected sequences
All sequences(52) RefSeq(6) UniProt(3)
Polymorphisms SNPs within 2kb(89 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019136 Transcription factor IIIC, subunit 5
Protein Ontology PR:000008329 general transcription factor 3C polypeptide 5
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:178918 Rajan S, et al., Analysis of early C2C12 myogenesis identifies stably and differentially expressed transcriptional regulators whose knock-down inhibits myoblast differentiation. Physiol Genomics. 2011 Dec 6;
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory