About   Help   FAQ
Vps36 Gene Detail
Summary
  • Symbol
    Vps36
  • Name
    vacuolar protein sorting 36
  • Synonyms
    1700010A24Rik, 2210415M20Rik, 2810408E15Rik, Eap45
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917410
    NCBI Gene: 70160
  • Gene Overview
    MyGene.info: VPS36
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:22192860-22218597 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 11.14 cM, cytoband A3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    12 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917410
protein coding gene Chr8:22192809-22220843 (.)
129S1/SvImJ MGP_129S1SvImJ_G0033447
protein coding gene Chr8:20037274-20066044 (+)
A/J MGP_AJ_G0033427
protein coding gene Chr8:19384677-19412381 (+)
AKR/J MGP_AKRJ_G0033352
protein coding gene Chr8:20015731-20046568 (+)
BALB/cJ MGP_BALBcJ_G0033423
protein coding gene Chr8:19507142-19535826 (+)
C3H/HeJ MGP_C3HHeJ_G0033137
protein coding gene Chr8:20215383-20243971 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033939
protein coding gene Chr8:20886183-20917379 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030895
protein coding gene Chr8:16716284-16744711 (+)
CAST/EiJ MGP_CASTEiJ_G0032463
protein coding gene Chr8:19637180-19665036 (+)
CBA/J MGP_CBAJ_G0033112
protein coding gene Chr8:21712728-21745405 (+)
DBA/2J MGP_DBA2J_G0033267
protein coding gene Chr8:19353020-19381117 (+)
FVB/NJ MGP_FVBNJ_G0033211
protein coding gene Chr8:19152965-19180807 (+)
LP/J MGP_LPJ_G0033356
protein coding gene Chr8:20033625-20062158 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033254
protein coding gene Chr8:21316186-21348717 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033958
protein coding gene Chr8:19913729-19943980 (+)
PWK/PhJ MGP_PWKPhJ_G0032175
protein coding gene Chr8:18942106-18971510 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032008
protein coding gene Chr8:19305649-19332713 (+)
WSB/EiJ MGP_WSBEiJ_G0032579
protein coding gene Chr8:20128223-20158781 (+)



Homology
more
  • Human Ortholog
    VPS36, vacuolar protein sorting 36 homolog
  • Vertebrate Orthologs
    10
  • Human Ortholog
    VPS36, vacuolar protein sorting 36 homolog
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C13orf9, CGI-145, EAP45
  • Links
    NCBI Gene ID: 51028
    neXtProt AC: NX_Q86VN1
    UniProt: Q86VN1

  • Chr Location
    13q14.3; chr13:52412602-52450678 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70160 NCBI Gene Model | MGI Sequence Detail 25738 C57BL/6J ±  kb
transcript NM_027338 RefSeq | MGI Sequence Detail 1290 FVB/N  
polypeptide Q91XD6 UniProt | EBI | MGI Sequence Detail 386 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000017334 vacuolar protein-sorting-associated protein 36
  • PDB
  • InterPro Domains
    IPR011993 PH-like domain superfamily
    IPR037855 Vacuolar protein sorting protein 36
    IPR021648 Vacuolar protein sorting protein 36, GLUE domain
    IPR036390 Winged helix DNA-binding domain superfamily
    IPR036388 Winged helix-like DNA-binding domain superfamily
Molecular
Reagents
less
  • All nucleic 90
    cDNA 90

    Microarray probesets 5
Other
Accession IDs
less
MGI:1922753, MGI:1923622
References
more
  • Summaries
    All 28
    Gene Ontology 6
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:237756 Smith J, et al., Angiogenesis QTL on Mouse Chromosome 8 Colocalizes with Differential beta-Defensin Expression. J Biomol Tech. 2015 Jul;26(2):45-53

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory