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Slc44a4
Gene Detail
Symbol

Name
ID
Slc44a4
solute carrier family 44, member 4
MGI:1917379
Synonyms
2210409B01Rik, NG22
Feature Type
protein coding gene
Genetic Map
Chromosome 17
18.46 cM, cytoband B2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:34914466-34930436 bp, + strand
From VEGA annotation of GRCm38

  15971 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11359  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC44A4
Gene Tree: Slc44a4

Human
homologs
SLC44A4, solute carrier family 44, member 4
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 80736
neXtProt AC: NX_Q53GD3

Human Synonyms: C6orf29, CTL4, NG22, TPPT

Human Chr (Location): 6p21.3; chr6:31863192-31879046 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(11) : Gene trapped(7) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc44a4 interacts with 47 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process acetylcholine biosynthetic process, acetylcholine secretion, ...
Component cell, extracellular exosome, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (1)    Tissues (1)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 1
cDNA source data(75)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc44a4 ; ZFIN slc44a4    NEW 
Molecular
reagents
All nucleic(76) cDNA(75) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000037275 (Evidence)
Ensembl Gene Model ENSMUSG00000007034 (Evidence)
Entrez Gene 70129 (Evidence)
UniGene 183126
DFCI TC1576707
DoTS DT.94155940, DT.528193, DT.101725047, DT.101153950
NIA Mouse Gene Index U017875
Consensus CDS Project CCDS37591.1
International Mouse Phenotyping Consortium Status Slc44a4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037275 VEGA Gene Model | MGI Sequence Detail 15971 C57BL/6J ±  kb
transcript OTTMUST00000096157 VEGA | MGI Sequence Detail 2261 Not Applicable 
polypeptide OTTMUSP00000053688 VEGA | MGI Sequence Detail 707 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(6) UniProt(4)
Polymorphisms
SNPs within 2kb(124 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007603 Choline transporter-like
Protein Ontology PR:000015146 choline transporter-like protein 4
References
(Earliest) J:63110 Martin AM, et al., Immunol Today. 2000;21(7):Centerfold
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory