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Dpf3 Gene Detail
Summary
  • Symbol
    Dpf3
  • Name
    D4, zinc and double PHD fingers, family 3
  • Synonyms
    2810403B03Rik, cer-d4, CERD4
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917377
    NCBI Gene: 70127
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:83213745-83487716 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 38.47 cM, cytoband D3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1088 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917377
protein coding gene Chr12:83213745-83487736 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019912
protein coding gene Chr12:83817653-84118668 (-)
A/J MGP_AJ_G0019869
protein coding gene Chr12:80654202-80936567 (-)
AKR/J MGP_AKRJ_G0019845
protein coding gene Chr12:82831431-83123374 (-)
BALB/cJ MGP_BALBcJ_G0019849
protein coding gene Chr12:81002209-81281879 (-)
C3H/HeJ MGP_C3HHeJ_G0019655
protein coding gene Chr12:83296636-83591683 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020301
protein coding gene Chr12:86218492-86523517 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017918
protein coding gene Chr12:77594572-77868213 (-)
CAST/EiJ MGP_CASTEiJ_G0019204
protein coding gene Chr12:78244496-78532346 (-)
CBA/J MGP_CBAJ_G0019626
protein coding gene Chr12:89530822-89855780 (-)
DBA/2J MGP_DBA2J_G0019741
protein coding gene Chr12:80215529-80490641 (-)
FVB/NJ MGP_FVBNJ_G0019727
protein coding gene Chr12:79148158-79430786 (-)
LP/J MGP_LPJ_G0019813
protein coding gene Chr12:83689218-83990800 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019766
protein coding gene Chr12:92535068-92832372 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020335
protein coding gene Chr12:82437812-82724361 (-)
PWK/PhJ MGP_PWKPhJ_G0018968
protein coding gene Chr12:74675194-74960008 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018763
protein coding gene Chr12:76891424-77173975 (-)
WSB/EiJ MGP_WSBEiJ_G0019256
protein coding gene Chr12:83082063-83383694 (-)



Homology
more
  • Human Ortholog
    DPF3, double PHD fingers 3
  • Vertebrate Orthologs
    8
  • Human Ortholog
    DPF3, double PHD fingers 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BAF45C, CERD4
  • Links
    NCBI Gene ID: 8110
    neXtProt AC: NX_Q92784
    UniProt: Q92784

  • Chr Location
    14q24.2; chr14:72609032-72894116 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Mice homozygous for a null allele display no detectable phenotype.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021221 Ensembl Gene Model | MGI Sequence Detail 273972 C57BL/6J ±  kb
transcript ENSMUST00000178756 Ensembl | MGI Sequence Detail 3135 Not Applicable  
polypeptide ENSMUSP00000136280 Ensembl | MGI Sequence Detail 378 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 20
    Genomic 1
    cDNA 15
    Primer pair 3
    Other 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:2145092
References
more
  • Summaries
    All 47
    Developmental Gene Expression 9
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:40295 Chestkov AV, et al., The d4 gene family in the human genome. Genomics. 1996 Aug 15;36(1):174-7
  • Latest
    J:242983 Shapira SN, et al., EBF2 transcriptionally regulates brown adipogenesis via the histone reader DPF3 and the BAF chromatin remodeling complex. Genes Dev. 2017 Apr 01;31(7):660-673

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/15/2019
MGI 6.14
The Jackson Laboratory