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Trim47 Gene Detail
Summary
  • Symbol
    Trim47
  • Name
    tripartite motif-containing 47
  • Synonyms
    2210023F24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917374
    NCBI Gene: 217333
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:115996576-116001061 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 80.91 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    12 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917374
 protein coding gene Chr11:115996576-116018036 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019414
 protein coding gene Chr11:120194993-120216762 (-)
A/J MGP_AJ_G0019383
 protein coding gene Chr11:114941809-114964544 (-)
AKR/J MGP_AKRJ_G0019353
 protein coding gene Chr11:118369911-118391130 (-)
BALB/cJ MGP_BALBcJ_G0019357
 protein coding gene Chr11:115353247-115374895 (-)
C3H/HeJ MGP_C3HHeJ_G0019163
 protein coding gene Chr11:118721656-118745361 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019807
 protein coding gene Chr11:123874527-123903763 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017430
 protein coding gene Chr11:111956532-111977847 (-)
CAST/EiJ MGP_CASTEiJ_G0018718
 protein coding gene Chr11:120074239-120100276 (-)
CBA/J MGP_CBAJ_G0019135
 protein coding gene Chr11:128766518-128789364 (-)
DBA/2J MGP_DBA2J_G0019246
 protein coding gene Chr11:114358098-114380593 (-)
FVB/NJ MGP_FVBNJ_G0019238
 protein coding gene Chr11:113873612-113895655 (-)
LP/J MGP_LPJ_G0019316
 protein coding gene Chr11:120575729-120597697 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019271
 protein coding gene Chr11:127856558-127879920 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019845
 protein coding gene Chr11:119028591-119051724 (-)
PWK/PhJ MGP_PWKPhJ_G0018482
 protein coding gene Chr11:115693362-115717590 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018275
 protein coding gene Chr11:118781341-118804460 (-)
WSB/EiJ MGP_WSBEiJ_G0018770
 protein coding gene Chr11:118990687-119014640 (-)



Homology
more
  • Human Ortholog
    TRIM47, tripartite motif containing 47
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM47, tripartite motif containing 47
  • Synonyms
    GOA, RNF100
  • Links
    NCBI Gene ID: 91107
    neXtProt AC: NX_Q96LD4
    UniProt: Q96LD4

  • Chr Location
    17q25.1; chr17:75874164-75878599 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    720
  • Tissues
    38
  • cDNA Data
    70
  • Literature Summary
    7
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 217333 NCBI Gene Model | MGI Sequence Detail 4486 C57BL/6J ±  kb
transcript NM_001205081 RefSeq | MGI Sequence Detail 2195 C57BL/6  
polypeptide Q8C0E3 UniProt | EBI | MGI Sequence Detail 641 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 72
    Genomic 2
    cDNA 70

    Microarray probesets 4
References
more
  • Summaries
    All 33
    Developmental Gene Expression 7
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:287680 Yamamoto H, et al., Functional and Evolutionary Diversification of Otx2 and Crx in Vertebrate Retinal Photoreceptor and Bipolar Cell Development. Cell Rep. 2020 Jan 21;30(3):658-671.e5
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
06/23/2022
MGI 6.20 		The Jackson Laboratory