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Trim47 Gene Detail
Summary
  • Symbol
    Trim47
  • Name
    tripartite motif-containing 47
  • Synonyms
    2210023F24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917374
    NCBI Gene: 217333
Location & Maps
more
  • Sequence Map
    Chr11:116105752-116127210 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      21459 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 80.91 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    TRIM47, tripartite motif containing 47
  • Vertebrate Orthologs
    8
  • Human Ortholog
    TRIM47, tripartite motif containing 47
    Orthology source: HomoloGene, HGNC
  • Synonyms
    GOA, RNF100
  • Links
    NCBI Gene ID: 91107
    neXtProt AC: NX_Q96LD4

  • Chr Location
    17q25; chr17:75874164-75878600 (-)  GRCh38.p2
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    47
  • Tissues
    38
  • cDNA Data
    70
  • Literature Summary
    6
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000003688 VEGA Gene Model | MGI Sequence Detail 21459 C57BL/6J ±  kb
transcript OTTMUST00000007995 VEGA | MGI Sequence Detail 2204 Not Applicable  
polypeptide OTTMUSP00000003887 VEGA | MGI Sequence Detail 642 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    71 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 71
    Genomic 1
    cDNA 70

    Microarray probesets 4
References
more
  • Summaries
    All 29
    Developmental Gene Expression 6
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:207154 Balasubramanian R, et al., Expression of LIM-homeodomain transcription factors in the developing and mature mouse retina. Gene Expr Patterns. 2014 Jan;14(1):1-8
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/20/2016
MGI 6.05 		The Jackson Laboratory