2310015D24Rik Gene Detail

Summary

• Symbol
  2310015D24Rik
• Name
  RIKEN cDNA 2310015D24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917350
  NCBI Gene: 70100
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:13331995-13338971 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  369 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917350	lncRNA gene	Chr16:13331995-13338971 (-)
129S1/SvImJ	ENSMUSG00200041332	protein coding gene	Chr16:10315431-10320912 (-)
129S1/SvImJ	ENSMUSG00200048434	lncRNA gene	Chr16:10314504-10321480 (-)
A/J	ENSMUSG00195012038	lncRNA gene	Chr16:9879556-9886534 (-)
A/J	ENSMUSG00195011451	protein coding gene	Chr16:9880483-9885966 (-)
AKR/J	ENSMUSG00220045797	lncRNA gene	Chr16:10176421-10183397 (-)
AKR/J	ENSMUSG00220041464	protein coding gene	Chr16:10177348-10182829 (-)
BALB/cJ	ENSMUSG00180041356	lncRNA gene	Chr16:10116291-10123269 (-)
BALB/cJ	ENSMUSG00180036491	protein coding gene	Chr16:10117218-10122701 (-)
C3H/HeJ	ENSMUSG00175051372	lncRNA gene	Chr16:10280518-10287510 (-)
C57BL/6NJ	ENSMUSG00215022417	lncRNA gene	Chr16:9996524-10003500 (-)
C57BL/6NJ	ENSMUSG00215012285	protein coding gene	Chr16:9997451-10002932 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005129	lincRNA gene	Chr16:10006881-10013444 (-)
CAST/EiJ	ENSTCUG00005046443	lncRNA gene	Chr16:10177442-10184442 (-)
CBA/J	ENSMUSG00210048508	lncRNA gene	Chr16:10297478-10304470 (-)
DBA/2J	ENSMUSG00185035990	lncRNA gene	Chr16:10243026-10250016 (-)
FVB/NJ	ENSMUSG00205042095	protein coding gene	Chr16:10232235-10237718 (-)
FVB/NJ	ENSMUSG00205048272	lncRNA gene	Chr16:10231308-10238286 (-)
JF1/MsJ	ENSUMUG00000053332	lncRNA gene	Chr16:10341337-10348278 (-)
LP/J	ENSMUSG00230046178	lncRNA gene	Chr16:12810065-12817041 (-)
LP/J	ENSMUSG00230045550	protein coding gene	Chr16:12810992-12816473 (-)
NOD/ShiLtJ	ENSMUSG00190048439	protein coding gene	Chr16:10372197-10377678 (-)
NOD/ShiLtJ	ENSMUSG00190049654	lncRNA gene	Chr16:10371270-10378246 (-)
NZO/HlLtJ	ENSMUSG00225031446	protein coding gene	Chr16:16056108-16061589 (-)
NZO/HlLtJ	ENSMUSG00225032278	lncRNA gene	Chr16:16055181-16062157 (-)
PWK/PhJ	ENSLUMG00010050294	lncRNA gene	Chr16:10219532-10226558 (-)
SPRET/EiJ	ENSMSPG00010048400	lncRNA gene	Chr16:10187602-10194535 (-)
WSB/EiJ	ENSIUOG00005045725	lncRNA gene	Chr16:10308391-10315383 (-)

Homology

• Gene Tree
  2310015D24Rik
  

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000099411 (Evidence)
• NCBI Gene
  70100

Representative Sequences			Length	Strain/Species
genomic	70100	NCBI Gene Model | MGI Sequence Detail	6977	C57BL/6J
transcript	NR_160674	RefSeq | MGI Sequence Detail	2941	ZRU/MplStud
polypeptide	Q3UW10	UniProt | EBI | MGI Sequence Detail	120	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2310015D24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140041	Chr16:13338293-13338302 (-)	673 bp