Ankrd60 Gene Detail

Summary

• Symbol
  Ankrd60
• Name
  ankyrin repeat domain 60
• Synonyms
  1700019A24Rik, 1700030G11Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1917315
  NCBI Gene: 70065
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr2:173568661-173578341 bp, - strand
• From NCBI annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 97.04 cM, cytoband H3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917315	protein coding gene	Chr2:173568661-173578365 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0026958	protein coding gene	Chr2:179866471-179876162 (-)
A/J	MGP_AJ_G0026925	protein coding gene	Chr2:172292246-172301949 (-)
AKR/J	MGP_AKRJ_G0026896	protein coding gene	Chr2:177484030-177493725 (-)
BALB/cJ	MGP_BALBcJ_G0026934	protein coding gene	Chr2:172695853-172705517 (-)
C3H/HeJ	MGP_C3HHeJ_G0026676	protein coding gene	Chr2:177873464-177883196 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0027381	protein coding gene	Chr2:185025274-185046477 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0024751	protein coding gene	Chr2:165521872-165531508 (-)
CAST/EiJ	MGP_CASTEiJ_G0026134	protein coding gene	Chr2:178587379-178600740 (-)
CBA/J	MGP_CBAJ_G0026653	protein coding gene	Chr2:191949722-191961285 (-)
DBA/2J	MGP_DBA2J_G0026791	protein coding gene	Chr2:171383405-171393104 (-)
FVB/NJ	MGP_FVBNJ_G0026757	protein coding gene	Chr2:170018351-170027980 (-)
LP/J	MGP_LPJ_G0026892	protein coding gene	Chr2:179787219-179796904 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0026776	protein coding gene	Chr2:194873284-194882912 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0027438	protein coding gene	Chr2:177504235-177513933 (-)
PWK/PhJ	MGP_PWKPhJ_G0025871	protein coding gene	Chr2:171193338-171203073 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0025671	protein coding gene	Chr2:176538010-176550757 (-)
WSB/EiJ	MGP_WSBEiJ_G0026207	protein coding gene	Chr2:178458416-178468104 (-)

Homology

• Human Ortholog
  ANKRD60, ankyrin repeat domain 60

• Vertebrate Orthologs
  7

• Human Ortholog
  ANKRD60, ankyrin repeat domain 60
  Orthology source: HomoloGene, HGNC
• Synonyms
  bA196N14.3, C20orf86
• Links
  HGNC:16217

  NCBI Gene ID: 140731

  neXtProt AC: NX_Q9BZ19

  UniProt: Q9BZ19

  
  
• Chr Location
  20q13.32; chr20:58216126-58228653 (-)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 43792
  1 human;1 mouse;1 rat;1 chimpanzee;1 dog;1 chicken;1 frog, western clawed
  
• HCOP
  human homology predictions: ANKRD60
• Gene Tree
  Ankrd60
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  13

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase ankrd60

Interactions

• Ankrd60 interacts with 9 markers (Mir204, Mir211, Mir215, ...) View All

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  4
• UniProt
  3
• CCDS
  CCDS50815.1
• UniGene
  425115

• Ensembl
  ENSMUSG00000027517 (Evidence)
• NCBI Gene
  70065

Representative Sequences			Length	Strain/Species
genomic	70065	NCBI Gene Model | MGI Sequence Detail	9681	C57BL/6J
transcript	NM_027303	RefSeq | MGI Sequence Detail	1000	C57BL/6
polypeptide	NP_081579	RefSeq | MGI Sequence Detail	229	C57BL/6

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR002110 Ankyrin repeat
  IPR020683 Ankyrin repeat-containing domain
  IPR036770 Ankyrin repeat-containing domain superfamily
  IPR039323 Ankyrin repeat domain-containing protein 60
  IPR000626 Ubiquitin-like domain
  IPR029071 Ubiquitin-like domain superfamily

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1916675

References

• Summaries
  All 17

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Ankrd60:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27999	Chr2:173578300-173578334 (-)	24 bp
Tssr27998	Chr2:173578215-173578278 (-)	94 bp
Tssr27997	Chr2:173578203-173578211 (-)	134 bp
Tssr27996	Chr2:173578188-173578199 (-)	147 bp
Tssr27995	Chr2:173578171-173578180 (-)	165 bp