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Sdr9c7
Gene Detail
Symbol

Name
ID
Sdr9c7
4short chain dehydrogenase/reductase family 9C, member 7
MGI:1917311
Synonyms
1810054F20Rik, Rdh20, Rdhs, Sdro, SDR-O
Feature Type
protein coding gene
Genetic Map
Chromosome 10
76.39 cM, cytoband D3
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr10:127898518-127911761 bp, + strand
From VEGA annotation of GRCm38

  13244 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23618  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: SDR9C7
Protein SuperFamily: retinol dehydrogenase
Gene Tree: Sdr9c7

Human
homologs
SDR9C7, short chain dehydrogenase/reductase family 9C, member 7
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 121214
neXtProt AC: NX_Q8NEX9

Human Synonyms: RDHS, SDRO, SDR-O

Human Chr (Location): 12q13.3; chr12:56923154-56934405 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(12) : Gene trapped(9) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Sdr9c7 interacts with 260 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (12)    Tissues (12)    Tissue x Stage Matrix (view)
Assay TypeResults
Northern blot 12
cDNA source data(10)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000027610 (Evidence)
Ensembl Gene Model ENSMUSG00000040127 (Evidence)
Entrez Gene 70061 (Evidence)
UniGene 158320
DFCI TC1584274
DoTS DT.60102274, DT.55126633
NIA Mouse Gene Index U012166
EC 1.1.1.-
Consensus CDS Project CCDS24256.1
International Mouse Phenotyping Consortium Status Sdr9c7
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027610 VEGA Gene Model | MGI Sequence Detail 13244 C57BL/6J ±  kb
transcript OTTMUST00000068340 VEGA | MGI Sequence Detail 2868 Not Applicable 
polypeptide OTTMUSP00000034528 VEGA | MGI Sequence Detail 313 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(283 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002347 Glucose/ribitol dehydrogenase
InterPro IPR016040 NAD(P)-binding domain
InterPro IPR020904 Short-chain dehydrogenase/reductase, conserved site
InterPro IPR002198 Short-chain dehydrogenase/reductase SDR
Protein Ontology PR:000031948 short-chain dehydrogenase/reductase family 9C member 7
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory