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Sdr9c7
Gene Detail
 Symbol
Name
ID
Sdr9c7
4short chain dehydrogenase/reductase family 9C, member 7
MGI:1917311
Synonyms 1810054F20Rik, Rdh20, Rdhs, Sdro, SDR-O
Feature Type protein coding gene
Genetic Map
Chromosome 10
76.39 cM, cytoband D3
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr10:127898518-127911761 bp, + strand
From VEGA annotation of GRCm38

  13244 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23618  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Protein SuperFamily: retinol dehydrogenase
Gene Tree: Sdr9c7

Human
homologs
Human Homolog SDR9C7, short chain dehydrogenase/reductase family 9C, member 7
NCBI Gene ID 121214
neXtProt AC  NX_Q8NEX9
Human Synonyms  RDHS, SDRO, SDR-O
Human Chr (Location)  12q13.3; chr12:56923154-56934405 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(12) : Gene trapped(9) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Sdr9c7 interacts with 260 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (33 annotations)
Process metabolic process, oxidation-reduction process
Component cytoplasm, nucleolus
Function 2-hydroxytetrahydrofuran dehydrogenase activity, 3-hydroxymenthone dehydrogenase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (12)    Tissues (12)   
Theiler Stages: 10, 18, 23, 25, 28
Assay TypeResults
Northern blot 12
cDNA source data(10)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000027610 (Evidence)
Ensembl Gene ModelENSMUSG00000040127 (Evidence)
Entrez Gene70061 (Evidence)
UniGene158320
DFCITC1584274
DoTSDT.55126633, DT.60102274
NIA Mouse Gene IndexU012166
EC1.1.1.-
Consensus CDS ProjectCCDS24256.1
International Mouse Knockout Project StatusSdr9c7
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027610 VEGA Gene Model | MGI Sequence Detail 13244 C57BL/6J ±  kb
transcript OTTMUST00000068340 VEGA | MGI Sequence Detail 2868 Not Applicable 
polypeptide OTTMUSP00000034528 VEGA | MGI Sequence Detail 313 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(283 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002347 Glucose/ribitol dehydrogenase
InterPro IPR016040 NAD(P)-binding domain
InterPro IPR020904 Short-chain dehydrogenase/reductase, conserved site
InterPro IPR002198 Short-chain dehydrogenase/reductase SDR
Protein Ontology PR:000031948 short-chain dehydrogenase/reductase family 9C member 7
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory