About   Help   FAQ
Trnt1
Gene Detail
 Symbol
Name
ID
Trnt1
tRNA nucleotidyl transferase, CCA-adding, 1
MGI:1917297
Synonyms 2410043H24Rik, 2610044E04Rik, CGI-47
Feature Type protein coding gene
Genetic Map
Chromosome 6
49.24 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr6:106769120-106782474 bp, + strand
From VEGA annotation of GRCm38

  13355 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9333  Vertebrate Homology Class
1 human; 1 mouse; 2 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: poly(A) polymerase/tRNA nucleotidyltransferase
Gene Tree: Trnt1

Human
homologs
Human Homolog TRNT1, tRNA nucleotidyl transferase, CCA-adding, 1
NCBI Gene ID 51095
neXtProt AC  NX_Q96Q11
Human Synonyms  CCA1, MtCCA
Human Chr (Location)  3p25.1; chr3:3126916-3149235 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(5) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Trnt1 interacts with 199 markers (Mir7-1, Mir20a, Mir26a-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (21 annotations)
Process RNA processing, tRNA 3'-end processing, ...
Component intracellular, mitochondrion
Function ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity, ATP binding, ...
External Resources: FuncBase
Expression
cDNA source data(13)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(13)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000023531 (Evidence)
Ensembl Gene ModelENSMUSG00000013736 (Evidence)
Entrez Gene70047 (Evidence)
NIA Mouse Gene IndexU007242
EC2.7.7.72
Consensus CDS ProjectCCDS20397.1, CCDS57443.1
International Mouse Knockout Project StatusTrnt1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023531 VEGA Gene Model | MGI Sequence Detail 13355 C57BL/6J ±  kb
transcript OTTMUST00000057363 VEGA | MGI Sequence Detail 1614 Not Applicable 
polypeptide OTTMUSP00000027662 VEGA | MGI Sequence Detail 434 Not Applicable 

For the selected sequences
All sequences(52) RefSeq(12) UniProt(1)
Polymorphisms SNPs within 2kb(152 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002646 Poly A polymerase, head domain
Protein Ontology PR:000016689 CCA tRNA nucleotidyltransferase 1, mitochondrial
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:151002 Pagliarini DJ, et al., A mitochondrial protein compendium elucidates complex I disease biology. Cell. 2008 Jul 11;134(1):112-23
All references(35)
Other
accession IDs
MGI:1353629, MGI:1889337, MGI:1917240

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/12/2014
MGI 5.19
The Jackson Laboratory