1700028I16Rik Gene Detail

Summary

• Symbol
  1700028I16Rik
• Name
  RIKEN cDNA 1700028I16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917253
  NCBI Gene: 70003
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:82647957-82660076 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 40.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  534 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917253	lncRNA gene	Chr10:82644214-82660247 (+)
129S1/SvImJ	ENSMUSG00200051090	lncRNA gene	Chr10:79130483-79142697 (+)
A/J	ENSMUSG00195050107	lncRNA gene	Chr10:79572331-79584446 (+)
AKR/J	ENSMUSG00220049134	lncRNA gene	Chr10:79181864-79193979 (+)
BALB/cJ	ENSMUSG00180053252	lncRNA gene	Chr10:79582724-79594842 (+)
C3H/HeJ	ENSMUSG00175052614	lncRNA gene	Chr10:79453504-79465619 (+)
C57BL/6NJ	ENSMUSG00215053589	lncRNA gene	Chr10:79134319-79146438 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004656	lincRNA gene	Chr10:76495788-76508415 (+)
CAST/EiJ	ENSTCUG00005052260	lncRNA gene	Chr10:78954006-78966223 (+)
CBA/J	ENSMUSG00210050196	lncRNA gene	Chr10:79309489-79321604 (+)
DBA/2J	ENSMUSG00185053661	lncRNA gene	Chr10:79519041-79531152 (+)
FVB/NJ	ENSMUSG00205052001	lncRNA gene	Chr10:79236503-79248618 (+)
JF1/MsJ	ENSUMUG00000055999	lncRNA gene	Chr10:80909760-80922013 (+)
LP/J	ENSMUSG00230019133	lncRNA gene	Chr10:81421487-81433602 (+)
NOD/ShiLtJ	ENSMUSG00190052885	lncRNA gene	Chr10:79565505-79577620 (+)
NZO/HlLtJ	ENSMUSG00225053156	lncRNA gene	Chr10:85707842-85719944 (+)
PWK/PhJ	ENSLUMG00010051906	lncRNA gene	Chr10:79220138-79232456 (+)
SPRET/EiJ	ENSMSPG00010048002	lncRNA gene	Chr10:80715210-80728054 (+)
WSB/EiJ	ENSIUOG00005051969	lncRNA gene	Chr10:79273279-79285385 (+)

Homology

• Gene Tree
  1700028I16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  22
• Chemically induced (other)
  1
• Gene trapped
  21
• Genomic Mutations
  1 involving 1700028I16Rik
• Find Mice (IMSR)
  43 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000056821 (Evidence)
• NCBI Gene
  70003

Representative Sequences			Length	Strain/Species
genomic	70003	NCBI Gene Model | MGI Sequence Detail	12120	C57BL/6J
transcript	NR_038042	RefSeq | MGI Sequence Detail	1056	C57BL/6
polypeptide	Q8CF33	UniProt | EBI | MGI Sequence Detail	104	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 20

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 1700028I16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94831	Chr10:82648033-82648043 (+)	81 bp