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1700027F09Rik Gene Detail
Summary
  • Symbol
    1700027F09Rik
  • Name
    RIKEN cDNA 1700027F09 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1917249
    NCBI Gene: 69999
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:64454813-64467942 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    147 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917249
lncRNA gene Chr5:64454813-64467943 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006654
lincRNA gene Chr5:64045400-64058504 (-)
A/J MGP_AJ_G0006648
lincRNA gene Chr5:61664813-61678590 (-)
AKR/J MGP_AKRJ_G0006618
lincRNA gene Chr5:63588002-63601779 (-)
BALB/cJ MGP_BALBcJ_G0006623
lincRNA gene Chr5:62338269-62351719 (-)
C3H/HeJ MGP_C3HHeJ_G0006570
lincRNA gene Chr5:63958956-63972093 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006788
lincRNA gene Chr5:66693647-66706750 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006048
lincRNA gene Chr5:57768446-57782822 (-)
CAST/EiJ MGP_CASTEiJ_G0006492
lincRNA gene Chr5:63028878-63042855 (-)
CBA/J MGP_CBAJ_G0006551
lincRNA gene Chr5:68849032-68862168 (-)
DBA/2J MGP_DBA2J_G0006571
lincRNA gene Chr5:61692809-61706338 (-)
FVB/NJ MGP_FVBNJ_G0006595
lincRNA gene Chr5:60867143-60880479 (-)
LP/J MGP_LPJ_G0006655
lincRNA gene Chr5:64506647-64519801 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006579
lincRNA gene Chr5:71759378-71773701 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006790
lincRNA gene Chr5:63283941-63297058 (-)
PWK/PhJ MGP_PWKPhJ_G0006431
lincRNA gene Chr5:60662191-60675524 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006339
lincRNA gene Chr5:62623359-62636729 (-)
WSB/EiJ MGP_WSBEiJ_G0006543
lincRNA gene Chr5:63494839-63508028 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving 1700027F09Rik
  • Find Mice (IMSR)
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69999 NCBI Gene Model | MGI Sequence Detail 13130 C57BL/6J ±  kb
transcript NR_040681 RefSeq | MGI Sequence Detail 766 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 24
    Phenotypes 17
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory