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Ptcd3 Gene Detail
Summary
  • Symbol
    Ptcd3
  • Name
    pentatricopeptide repeat domain 3
  • Synonyms
    2610034F17Rik, 2810422B04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917206
    NCBI Gene: 69956
Location & Maps
more
  • Sequence Map
    Chr6:71880638-71908750 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      28113 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 32.21 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    PTCD3, pentatricopeptide repeat domain 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PTCD3, pentatricopeptide repeat domain 3
    Orthology source: HGNC, HomoloGene
  • Synonyms
    MRP-S39
  • Links
    NCBI Gene ID: 55037
    neXtProt AC: NX_Q96EY7

  • Chr Location
    2p11.2; chr2:86106182-86142157 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 41211
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: PTCD3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    44
  • Gene trapped
    41
  • Spontaneous
    1
  • Targeted
    2
  • Genomic Mutations
    1 involving Ptcd3
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000057915 VEGA Gene Model | MGI Sequence Detail 28113 C57BL/6J ±  kb
transcript OTTMUST00000142200 VEGA | MGI Sequence Detail 2581 Not Applicable  
polypeptide OTTMUSP00000074225 VEGA | MGI Sequence Detail 685 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    458 from dbSNP Build 142
Protein
Information
less
  • UniProt
    7 Sequences
  • Protein Ontology
    PR:000029700 pentatricopeptide repeat-containing protein 3, mitochondrial
  • InterPro Domains
    IPR002885 Pentatricopeptide repeat
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 3
Other
Accession IDs
less
MGI:1889373, MGI:1922671, MGI:2141596
References
more
  • Summaries
    All 34
    Gene Ontology 3
    Phenotypes 10
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/15/2016
MGI 6.04
The Jackson Laboratory