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Snhg8 Gene Detail
Summary
  • Symbol
    Snhg8
  • Name
    small nucleolar RNA host gene 8
  • Synonyms
    1110065M07Rik, 2010109N14Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1917145
    NCBI Gene: 69895
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:123507552-123508336 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 54.58 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    94 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917145
lncRNA gene Chr3:123507552-123508404 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015524
unclassified non-coding RNA gene Chr3:125815328-125816180 (-)
A/J MGP_AJ_G0015501
unclassified non-coding RNA gene Chr3:121604504-121605357 (-)
AKR/J MGP_AKRJ_G0015465
unclassified non-coding RNA gene Chr3:124707982-124708835 (-)
BALB/cJ MGP_BALBcJ_G0015463
unclassified non-coding RNA gene Chr3:121412424-121413277 (-)
C3H/HeJ MGP_C3HHeJ_G0015286
unclassified non-coding RNA gene Chr3:125102135-125102988 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015917
unclassified non-coding RNA gene Chr3:130374772-130375624 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013652
unclassified non-coding RNA gene Chr3:117022528-117023366 (-)
CAST/EiJ MGP_CASTEiJ_G0014840
unclassified non-coding RNA gene Chr3:124521475-124522315 (-)
CBA/J MGP_CBAJ_G0015267
unclassified non-coding RNA gene Chr3:134774302-134775155 (-)
DBA/2J MGP_DBA2J_G0015361
unclassified non-coding RNA gene Chr3:120735584-120736436 (-)
FVB/NJ MGP_FVBNJ_G0015368
unclassified non-coding RNA gene Chr3:118356856-118357708 (-)
LP/J MGP_LPJ_G0015440
unclassified non-coding RNA gene Chr3:127356251-127357103 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015392
unclassified non-coding RNA gene Chr3:142351584-142352436 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015958
unclassified non-coding RNA gene Chr3:124278315-124279167 (-)
PWK/PhJ MGP_PWKPhJ_G0014626
unclassified non-coding RNA gene Chr3:120480068-120480921 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014414
unclassified non-coding RNA gene Chr3:122388658-122389538 (-)
WSB/EiJ MGP_WSBEiJ_G0014946
unclassified non-coding RNA gene Chr3:125030037-125030888 (-)



Homology
more
  • Human Ortholog
    SNHG8, small nucleolar RNA host gene 8
  • Human Ortholog
    SNHG8, small nucleolar RNA host gene 8
    Orthology source: HGNC
  • Synonyms
    LINC00060, NCRNA00060
  • Links
    NCBI Gene ID: 100093630

  • Chr Location
    4q26; chr4:118278762-118279823 (+)  GRCh38.p7

  • HCOP
    human homology predictions: SNHG8
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    23
  • Chemically induced (other)
    1
  • Gene trapped
    21
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Snhg8
  • Find Mice (IMSR)
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic 69895 NCBI Gene Model | MGI Sequence Detail 785 C57BL/6J ±  kb
transcript NR_028574 RefSeq | MGI Sequence Detail 785 Not Specified  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
Other
Accession IDs
less
MGI:1923586
References
more
  • Summaries
    All 25
    Developmental Gene Expression 2
    Diseases 1
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory