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Ttc39b Gene Detail
Summary
  • Symbol
    Ttc39b
  • Name
    tetratricopeptide repeat domain 39B
  • Synonyms
    1810054D07Rik, 9130422G05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917113
    NCBI Gene: 69863
  • Gene Overview
    MyGene.info: TTC39B
Location & Maps
more
  • Sequence Map
    Chr4:83220300-83324255 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      103956 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 39.41 cM, cytoband C3
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    TTC39B, tetratricopeptide repeat domain 39B
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TTC39B, tetratricopeptide repeat domain 39B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C9orf52
  • Links
    NCBI Gene ID: 158219
    neXtProt AC: NX_Q5VTQ0
    UniProt: Q5VTQ0

  • Chr Location
    9p22.3; chr9:15167204-15307360 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000031 VEGA Gene Model | MGI Sequence Detail 103956 C57BL/6J ±  kb
transcript OTTMUST00000000091 VEGA | MGI Sequence Detail 8831 Not Applicable  
polypeptide OTTMUSP00000000049 VEGA | MGI Sequence Detail 617 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    946 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 52
    cDNA 52

    Microarray probesets 10
Other
Accession IDs
less
MGI:1914069, MGI:2140292, MGI:2140529, MGI:2140564
References
more
  • Summaries
    All 38
    Developmental Gene Expression 2
    Phenotypes 12
  • Earliest
    J:23094 Davisson MT, New chromosome aberrations. Mouse News Lett. 1988;80:166
  • Latest
    J:205051 Miller JA, et al., Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development. 2013 Nov;140(22):4633-44

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/14/2017
MGI 6.08
The Jackson Laboratory