2010003K11Rik Gene Detail

Summary

• Symbol
  2010003K11Rik
• Name
  RIKEN cDNA 2010003K11 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1917111
  NCBI Gene: 69861
• Alliance
  gene page

Location & Maps

• Sequence Map
  Chr19:4496790-4498583 bp, - strand
• From Ensembl annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    1794 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 4.07 cM, cytoband A
• Mapping Data
  2 experiments

Homology

• Human Ortholog
  C11orf86, chromosome 11 open reading frame 86

• Vertebrate Orthologs
  7

• Human Ortholog
  C11orf86, chromosome 11 open reading frame 86
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:34442

  NCBI Gene ID: 254439

  neXtProt AC: NX_A6NJI1

  UniProt: A6NJI1

  
  
• Chr Location
  11q13.2; chr11:66975283-66977008 (+)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 52832
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 macaque, rhesus
  
• HCOP
  human homology predictions: C11orf86
• Gene Tree
  2010003K11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  15

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 2010003K11Rik interacts with 105 markers (Mir9-1, Mir9-2, Mir9-3, ...) View All

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS29429.1
• UniGene
  282978

• Ensembl
  ENSMUSG00000042041 (Evidence)
• NCBI Gene
  69861

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000042041	Ensembl Gene Model | MGI Sequence Detail	1794	C57BL/6J
transcript	ENSMUST00000048482	Ensembl | MGI Sequence Detail	1165	Not Applicable
polypeptide	ENSMUSP00000036729	Ensembl | MGI Sequence Detail	124	Not Applicable

Polymorphisms

• SNPs within 2kb
  34 from dbSNP Build 142

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR027990 Protein of unknown function DUF4633

Molecular
Reagents

• All nucleic 15

  cDNA 15

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86