2010003K11Rik Gene Detail

Summary

• Symbol
  2010003K11Rik
• Name
  RIKEN cDNA 2010003K11 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1917111
  NCBI Gene: 69861
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr19:4496788-4498583 bp, - strand
• From NCBI annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 4.07 cM, cytoband A
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917111	protein coding gene	Chr19:4496788-4498583 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0024665	protein coding gene	Chr19:1374012-1375805 (-)
A/J	MGP_AJ_G0024631	protein coding gene	Chr19:1304628-1306421 (-)
AKR/J	MGP_AKRJ_G0024604	protein coding gene	Chr19:1344711-1346504 (-)
BALB/cJ	MGP_BALBcJ_G0024631	protein coding gene	Chr19:1301171-1302964 (-)
C3H/HeJ	MGP_C3HHeJ_G0024399	protein coding gene	Chr19:1347299-1349092 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0025079	protein coding gene	Chr19:1423413-1425206 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022508	protein coding gene	Chr19:1245254-1247046 (-)
CAST/EiJ	MGP_CASTEiJ_G0023871	protein coding gene	Chr19:1352406-1354201 (-)
CBA/J	MGP_CBAJ_G0024370	protein coding gene	Chr19:1499396-1501188 (-)
DBA/2J	MGP_DBA2J_G0024498	protein coding gene	Chr19:1267622-1269414 (-)
FVB/NJ	MGP_FVBNJ_G0024465	protein coding gene	Chr19:1291384-1293177 (-)
LP/J	MGP_LPJ_G0024584	protein coding gene	Chr19:1385948-1387741 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024495	protein coding gene	Chr19:1411263-1413056 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025126	protein coding gene	Chr19:1347079-1348872 (-)
PWK/PhJ	MGP_PWKPhJ_G0023617	protein coding gene	Chr19:1323338-1325133 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0023422	protein coding gene	Chr19:1333583-1335380 (-)
WSB/EiJ	MGP_WSBEiJ_G0023933	protein coding gene	Chr19:1336078-1337871 (-)

Homology

• Human Ortholog
  C11orf86, chromosome 11 open reading frame 86

• Vertebrate Orthologs
  7

• Human Ortholog
  C11orf86, chromosome 11 open reading frame 86
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:34442

  NCBI Gene ID: 254439

  neXtProt AC: NX_A6NJI1

  UniProt: A6NJI1

  
  
• Chr Location
  11q13.2; chr11:66975283-66977008 (+)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 52832
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 macaque, rhesus
  
• HCOP
  human homology predictions: C11orf86
• Gene Tree
  2010003K11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  15

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 2010003K11Rik interacts with 105 markers (Mir9-1, Mir9-2, Mir9-3, ...) View All

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS29429.1
• UniGene
  282978

• Ensembl
  ENSMUSG00000042041 (Evidence)
• NCBI Gene
  69861

Representative Sequences			Length	Strain/Species
genomic	69861	NCBI Gene Model | MGI Sequence Detail	1796	C57BL/6J
transcript	NM_027237	RefSeq | MGI Sequence Detail	1167	C57BL/6
polypeptide	Q8VC23	UniProt | EBI | MGI Sequence Detail	124	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR027990 Protein of unknown function DUF4633

Molecular
Reagents

• All nucleic 15

  cDNA 15

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86

TSS for 2010003K11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157501	Chr19:4498603-4498614 (-)	-26 bp
Tssr157500	Chr19:4498574-4498596 (-)	-2 bp
Tssr157499	Chr19:4498547-4498572 (-)	23 bp
Tssr157498	Chr19:4498532-4498543 (-)	45 bp
Tssr157497	Chr19:4498399-4498410 (-)	178 bp