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Rpain Gene Detail
Summary
  • Symbol
    Rpain
  • Name
    RPA interacting protein
  • Synonyms
    2400006N03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916973
    NCBI Gene: 69723
  • Gene Overview
    MyGene.info: RPAIN
Location & Maps
more
  • Sequence Map
    Chr11:70970213-70977833 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      7621 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 43.21 cM, cytoband B4
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    RPAIN, RPA interacting protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPAIN, RPA interacting protein
    Orthology source: HGNC, HomoloGene
  • Synonyms
    HRIP, RIP
  • Links
    NCBI Gene ID: 84268
    neXtProt AC: NX_Q86UA6

  • Chr Location
    17p13.2; chr17:5419641-5433020 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 13006
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: RPAIN
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Gene trapped
    3
  • Targeted
    3
  • Genomic Mutations
    2 involving Rpain
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006076 VEGA Gene Model | MGI Sequence Detail 7621 C57BL/6J ±  kb
transcript OTTMUST00000013710 VEGA | MGI Sequence Detail 1100 Not Applicable  
polypeptide OTTMUSP00000006359 VEGA | MGI Sequence Detail 219 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    52 from dbSNP Build 142
Protein
Information
less
  • UniProt
    9 Sequences
  • Protein Ontology
    PR:000014174 RPA-interacting protein
  • InterPro Domains
    IPR028156 RPA-interacting protein
    IPR028155 RPA-interacting protein, central domain
    IPR028159 RPA-interacting protein, C-terminal domain
    IPR028158 RPA-interacting protein, N-terminal domain
Molecular
Reagents
less
  • All nucleic 34
    cDNA 34

    Microarray probesets 4
References
more
  • Summaries
    All 25
    Gene Ontology 3
    Phenotypes 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory