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Col22a1 Gene Detail
Summary
  • Symbol
    Col22a1
  • Name
    collagen, type XXII, alpha 1
  • Synonyms
    2310067L16Rik, C80743
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916950
    NCBI Gene: 69700
Location & Maps
more
  • Sequence Map
    Chr15:71795795-72034227 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      238433 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 32.31 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    COL22A1, collagen type XXII alpha 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    COL22A1, collagen type XXII alpha 1
    Orthology source: HomoloGene
  • Links
    NCBI Gene ID: 169044
    neXtProt AC: NX_Q8NFW1

  • Chr Location
    8q24.3; chr8:138588235-138914094 (-)  GRCh38.p2

Human Diseases
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  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    21 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    3
  • Radiation induced
    2
  • Genomic Mutations
    5 involving Col22a1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033423 VEGA Gene Model | MGI Sequence Detail 238433 C57BL/6J ±  kb
transcript OTTMUST00000084152 VEGA | MGI Sequence Detail 8809 Not Applicable  
polypeptide OTTMUSP00000045312 VEGA | MGI Sequence Detail 1613 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    4126 from dbSNP Build 142
Protein
Information
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  • UniProt
    4 Sequences
  • InterPro Domains
    IPR008160 Collagen triple helix repeat
    IPR013320 Concanavalin A-like lectin/glucanase domain
    IPR001791 Laminin G domain
    IPR002035 von Willebrand factor, type A
Molecular
Reagents
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  • All nucleic 16
    cDNA 16

    Microarray probesets 4
Other
Accession IDs
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MGI:2146297
References
more
  • Summaries
    All 21
    Developmental Gene Expression 4
    Diseases 1
    Phenotypes 21
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:171612 Juan AH, et al., Polycomb EZH2 controls self-renewal and safeguards the transcriptional identity of skeletal muscle stem cells. Genes Dev. 2011 Apr 15;25(8):789-94

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/12/2016
MGI 6.04
The Jackson Laboratory