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Col22a1 Gene Detail
Summary
  • Symbol
    Col22a1
  • Name
    collagen, type XXII, alpha 1
  • Synonyms
    2310067L16Rik, C80743
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916950
    NCBI Gene: 69700
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:71795795-72034227 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 32.31 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4126 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916950
protein coding gene Chr15:71795795-72150978 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021915
protein coding gene Chr15:71460343-71707404 (-)
A/J MGP_AJ_G0021874
protein coding gene Chr15:68894197-69146467 (-)
AKR/J MGP_AKRJ_G0021856
protein coding gene Chr15:70655245-70902457 (-)
BALB/cJ MGP_BALBcJ_G0021881
protein coding gene Chr15:68909640-69150686 (-)
C3H/HeJ MGP_C3HHeJ_G0021654
protein coding gene Chr15:70800685-71047532 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022320
protein coding gene Chr15:74215069-74461108 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019857
protein coding gene Chr15:65377965-65617636 (-)
CAST/EiJ MGP_CASTEiJ_G0021173
protein coding gene Chr15:71517307-71772039 (-)
CBA/J MGP_CBAJ_G0021620
protein coding gene Chr15:76643155-76904909 (-)
DBA/2J MGP_DBA2J_G0021745
protein coding gene Chr15:68510398-68760441 (-)
FVB/NJ MGP_FVBNJ_G0021727
protein coding gene Chr15:67526859-67771284 (-)
LP/J MGP_LPJ_G0021817
protein coding gene Chr15:71482122-71734274 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021750
protein coding gene Chr15:82045063-82299077 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022342
protein coding gene Chr15:71054216-71302958 (-)
PWK/PhJ MGP_PWKPhJ_G0020914
protein coding gene Chr15:68586880-68830779 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020755
protein coding gene Chr15:70881756-71169538 (-)
WSB/EiJ MGP_WSBEiJ_G0021225
protein coding gene Chr15:71033897-71286673 (-)



Homology
more
  • Human Ortholog
    COL22A1, collagen type XXII alpha 1 chain
  • Vertebrate Orthologs
    10
  • Human Ortholog
    COL22A1, collagen type XXII alpha 1 chain
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 169044
    neXtProt AC: NX_Q8NFW1
    UniProt: Q8NFW1

  • Chr Location
    8q24.23-q24.3; chr8:138588235-138914087 (-)  GRCh38.p7

Human Diseases
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  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000079022 Ensembl Gene Model | MGI Sequence Detail 238433 C57BL/6J ±  kb
transcript ENSMUST00000159993 Ensembl | MGI Sequence Detail 8809 Not Applicable  
polypeptide ENSMUSP00000125069 Ensembl | MGI Sequence Detail 1613 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    4 Sequences
  • InterPro Domains
    IPR008160 Collagen triple helix repeat
    IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
    IPR001791 Laminin G domain
    IPR036465 von Willebrand factor A-like domain superfamily
    IPR002035 von Willebrand factor, type A
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 4
Other
Accession IDs
less
MGI:2146297
References
more
  • Summaries
    All 46
    Developmental Gene Expression 4
    Diseases 1
    Gene Ontology 3
    Phenotypes 23
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:265607 Naba A, et al., Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression. Sci Rep. 2017 Jan 10;7:40495

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory