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Slc52a3
Gene Detail
Symbol

Name
ID
Slc52a3
solute carrier protein family 52, member 3
MGI:1916948
Synonyms
2310046K01Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 2
74.83 cM, cytoband H1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr2:151996535-152009258 bp, + strand
From VEGA annotation of GRCm38

  12724 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:12324  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC52A3
Gene Tree: Slc52a3

Human
homologs
SLC52A3, solute carrier family 52 (riboflavin transporter), member 3
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 113278
neXtProt AC: NX_Q9NQ40

Human Synonyms: bA371L19.1, BVVLS, BVVLS1, C20orf54, hRFT2, RFT2, RFVT3

Human Chr (Location): 20p13; chr20:760080-775985 (-)  GRCh38.p2

Disease Associations: (2) Diseases Associated with Human SLC52A3

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc52a3 interacts with 133 markers (Mir27a, Mir27b, Mir30a, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (41)    Tissues (31)    Images (10)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 41
cDNA source data(28)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(28) cDNA(28)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000015850 (Evidence)
Ensembl Gene Model ENSMUSG00000027463 (Evidence)
Entrez Gene 69698 (Evidence)
UniGene 258262
DFCI TC1577301, TC1725792
DoTS DT.94236199, DT.97407347, DT.482513
NIA Mouse Gene Index U002632
Consensus CDS Project CCDS16876.1, CCDS50749.1
International Mouse Phenotyping Consortium Status Slc52a3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015850 VEGA Gene Model | MGI Sequence Detail 12724 C57BL/6J ±  kb
transcript OTTMUST00000037669 VEGA | MGI Sequence Detail 2669 Not Applicable 
polypeptide OTTMUSP00000016892 VEGA | MGI Sequence Detail 460 Not Applicable 

For the selected sequences
All sequences(41) RefSeq(6) UniProt(1)
Polymorphisms
SNPs within 2kb(112 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009357 Endogenous retrovirus receptor
Protein Ontology PR:000032131 solute carrier family 52, riboflavin transporter, member 3
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory