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Hddc2 Gene Detail
Summary
  • Symbol
    Hddc2
  • Name
    HD domain containing 2
  • Synonyms
    2310057G13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916942
    NCBI Gene: 69692
Location & Maps
more
  • Sequence Map
    Chr10:31313382-31328204 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      14823 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 17.34 cM, cytoband A4
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    HDDC2, HD domain containing 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HDDC2, HD domain containing 2
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C6orf74, CGI-130, dJ167O5.2, NS5ATP2
  • Links
    NCBI Gene ID: 51020
    neXtProt AC: NX_Q7Z4H3

  • Chr Location
    6q13-q24.3; chr6:125275350-125302141 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 5431
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: HDDC2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Targeted
    2
  • Genomic Mutations
    1 involving Hddc2
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028054 VEGA Gene Model | MGI Sequence Detail 14823 C57BL/6J ±  kb
transcript OTTMUST00000069481 VEGA | MGI Sequence Detail 859 Not Applicable  
polypeptide OTTMUSP00000035290 VEGA | MGI Sequence Detail 199 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    176 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
References
more
  • Summaries
    All 22
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/15/2016
MGI 6.04
The Jackson Laboratory