Atcayos Gene Detail

Summary

• Symbol
  Atcayos
• Name
  ataxia, cerebellar, Cayman type, opposite strand
• Synonyms
  2310050B05Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1916928
  NCBI Gene: 69678
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:81030525-81044204 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  367 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916928	antisense lncRNA gene	Chr10:81030253-81046711 (+)
129S1/SvImJ	ENSMUSG00200050913	lncRNA gene	Chr10:77657597-77673864 (+)
A/J	ENSMUSG00195051039	lncRNA gene	Chr10:78052871-78069131 (+)
AKR/J	ENSMUSG00220049773	lncRNA gene	Chr10:77650544-77666812 (+)
BALB/cJ	ENSMUSG00180053388	lncRNA gene	Chr10:78063313-78079581 (+)
C3H/HeJ	ENSMUSG00175052483	lncRNA gene	Chr10:77934063-77950325 (+)
C57BL/6NJ	ENSMUSG00215053209	lncRNA gene	Chr10:77675921-77692185 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002529	antisense lncRNA gene	Chr10:75193803-75210549 (+)
CAST/EiJ	ENSTCUG00005052181	lncRNA gene	Chr10:77557562-77574028 (+)
CBA/J	ENSMUSG00210050239	lncRNA gene	Chr10:77790090-77806354 (+)
DBA/2J	ENSMUSG00185053951	lncRNA gene	Chr10:78132526-78148795 (+)
FVB/NJ	ENSMUSG00205051330	lncRNA gene	Chr10:77845327-77861599 (+)
JF1/MsJ	ENSUMUG00000056380	lncRNA gene	Chr10:79359645-79376085 (+)
LP/J	ENSMUSG00230051061	lncRNA gene	Chr10:79902109-79918373 (+)
NOD/ShiLtJ	ENSMUSG00190052849	lncRNA gene	Chr10:78046226-78062490 (+)
NZO/HlLtJ	ENSMUSG00225053197	lncRNA gene	Chr10:84188681-84204945 (+)
PWK/PhJ	ENSLUMG00010051537	lncRNA gene	Chr10:77723414-77739820 (+)
SPRET/EiJ	ENSMSPG00010048611	lncRNA gene	Chr10:79333677-79350042 (+)
WSB/EiJ	ENSIUOG00005051577	lncRNA gene	Chr10:77785976-77802306 (+)

Homology

• Gene Tree
  Atcayos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotypes from 1 allele in 1 genetic background
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Atcayos
• Find Mice (IMSR)
  1 strains or lines available
• Comparison Matrix
  Gene Expression + Phenotype

Mice homozygous for a null allele exhibit decreased heart left ventricle weight without a change in fractional shortening.

Expression

• Assay Results
  603
• Tissues
  5
• cDNA Data
  21
• Literature Summary
  1

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  1

• Ensembl
  ENSMUSG00000085779 (Evidence)
• NCBI Gene
  69678

Representative Sequences			Length	Strain/Species
genomic	69678	NCBI Gene Model | MGI Sequence Detail	13680	C57BL/6J
transcript	NR_015477	RefSeq | MGI Sequence Detail	318	C57BL/6

Molecular
Reagents

• All nucleic 23

  cDNA 21

  Primer pair 2

  
  

  Microarray probesets 4

References

• Summaries
  All 20

  Developmental Gene Expression 1

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:284183 George MR, et al., Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs. Development. 2019 Dec 9;146(23):dev185314

TSS for Atcayos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94716	Chr10:81030434-81030441 (+)	-87 bp
Tssr94717	Chr10:81030518-81030534 (+)	1 bp
Tssr94718	Chr10:81030914-81030917 (+)	391 bp
Tssr94719	Chr10:81042885-81042898 (+)	12,367 bp