2310061N02Rik Gene Detail

Summary

• Symbol
  2310061N02Rik
• Name
  RIKEN cDNA 2310061N02 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1916911
  NCBI Gene: 69661
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:88504059-88504850 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 51.40 cM, cytoband C3.3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916911	protein coding gene	Chr16:88504057-88504850 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022989	protein coding gene	Chr16:89520767-89521560 (-)
A/J	MGP_AJ_G0022957	protein coding gene	Chr16:85368239-85369032 (-)
AKR/J	MGP_AKRJ_G0022927	protein coding gene	Chr16:87972372-87973165 (-)
BALB/cJ	MGP_BALBcJ_G0022959	protein coding gene	Chr16:85900757-85901550 (-)
C3H/HeJ	MGP_C3HHeJ_G0022721	protein coding gene	Chr16:88532249-88533042 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0023406	protein coding gene	Chr16:92393355-92394148 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020910	protein coding gene	Chr16:83197165-83197958 (-)
CAST/EiJ	MGP_CASTEiJ_G0022243	protein coding gene	Chr16:88964640-88965433 (-)
CBA/J	MGP_CBAJ_G0022690	protein coding gene	Chr16:96361186-96361979 (-)
DBA/2J	MGP_DBA2J_G0022824	protein coding gene	Chr16:85301550-85302343 (-)
FVB/NJ	MGP_FVBNJ_G0022799	protein coding gene	Chr16:84394725-84395518 (-)
LP/J	MGP_LPJ_G0022893	protein coding gene	Chr16:89204050-89204843 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022818	protein coding gene	Chr16:100885867-100886660 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023424	protein coding gene	Chr16:88462519-88463312 (-)
PWK/PhJ	MGP_PWKPhJ_G0021986	protein coding gene	Chr16:85453872-85454665 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021816	protein coding gene	Chr16:88018594-88019387 (-)
WSB/EiJ	MGP_WSBEiJ_G0022291	protein coding gene	Chr16:88687368-88688161 (-)

Homology

• Human Ortholog
  KRTAP13-3, keratin associated protein 13-3

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  KRTAP13-3, keratin associated protein 13-3
  
• Synonyms
  KAP13.3
• Links
  HGNC:18925

  NCBI Gene ID: 337960

  neXtProt AC: NX_Q3SY46

  UniProt: Q3SY46

  
  
• Chr Location
  21q22.11; chr21:30425393-30425912 (-)  GRCh38.p7

---

• Human Ortholog
  KRTAP13-4, keratin associated protein 13-4
  
• Synonyms
  KAP13.4
• Links
  HGNC:18926

  NCBI Gene ID: 284827

  neXtProt AC: NX_Q3LI77

  UniProt: Q3LI77

  
  
• Chr Location
  21q22.11; chr21:30430276-30430758 (+)  GRCh38.p7

---

• Alliance of Genome Resources
  2310061N02Rik stringent orthology
  2 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: KRTAP13-3, KRTAP13-4
• Gene Tree
  2310061N02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  2
• Genomic Mutations
  3 involving 2310061N02Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  672
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 2310061N02Rik interacts with 29 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS49893.1

• Ensembl
  ENSMUSG00000050704 (Evidence)
• NCBI Gene
  69661

Representative Sequences			Length	Strain/Species
genomic	69661	NCBI Gene Model | MGI Sequence Detail	792	C57BL/6J
transcript	NM_027155	RefSeq | MGI Sequence Detail	792	C57BL/6
polypeptide	NP_081431	RefSeq | MGI Sequence Detail	174	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007951 Keratin-associated protein, PMG type

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 19

  Gene Ontology 1

  Phenotypes 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:262380 Watson-Scales S, et al., Analysis of motor dysfunction in Down Syndrome reveals motor neuron degeneration. PLoS Genet. 2018 May;14(5):e1007383

TSS for 2310061N02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141968	Chr16:88504849-88504853 (-)	-1 bp