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Sdr39u1 Gene Detail
Summary
  • Symbol
    Sdr39u1
  • Name
    short chain dehydrogenase/reductase family 39U, member 1
  • Synonyms
    2310014G06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916876
    NCBI Gene: 654795
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:55897283-55900281 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 28.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    49 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916876
protein coding gene Chr14:55897283-55900293 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021377
protein coding gene Chr14:49956881-49959827 (-)
A/J MGP_AJ_G0021336
protein coding gene Chr14:48945691-48948637 (-)
AKR/J MGP_AKRJ_G0021312
protein coding gene Chr14:50713793-50716739 (-)
BALB/cJ MGP_BALBcJ_G0021340
protein coding gene Chr14:48919995-48922941 (-)
C3H/HeJ MGP_C3HHeJ_G0021120
protein coding gene Chr14:50396701-50399647 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021778
protein coding gene Chr14:52457250-52460196 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019325
protein coding gene Chr14:47309050-47312169 (-)
CAST/EiJ MGP_CASTEiJ_G0020639
protein coding gene Chr14:46655800-46658750 (-)
CBA/J MGP_CBAJ_G0021087
protein coding gene Chr14:54019518-54022464 (-)
DBA/2J MGP_DBA2J_G0021208
protein coding gene Chr14:48666641-48669588 (-)
FVB/NJ MGP_FVBNJ_G0021190
protein coding gene Chr14:48115093-48118039 (-)
LP/J MGP_LPJ_G0021282
protein coding gene Chr14:50995619-50998565 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021214
protein coding gene Chr14:53370240-53373186 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021805
protein coding gene Chr14:49887593-49890539 (-)
PWK/PhJ MGP_PWKPhJ_G0020386
protein coding gene Chr14:45203699-45206645 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020214
protein coding gene Chr14:45878606-45881561 (-)
WSB/EiJ MGP_WSBEiJ_G0020692
protein coding gene Chr14:50167107-50170053 (-)



Homology
more
  • Human Ortholog
    SDR39U1, short chain dehydrogenase/reductase family 39U member 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SDR39U1, short chain dehydrogenase/reductase family 39U member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C14orf124, HCDI
  • Links
    NCBI Gene ID: 56948
    neXtProt AC: NX_Q9NRG7
    UniProt: Q9NRG7

  • Chr Location
    14q12; chr14:24439766-24442905 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 654795 NCBI Gene Model | MGI Sequence Detail 2999 C57BL/6J ±  kb
transcript NM_001082975 RefSeq | MGI Sequence Detail 1243 C57BL/6  
polypeptide Q5M8N4 UniProt | EBI | MGI Sequence Detail 293 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
References
more
  • Summaries
    All 26
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory