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Sdr39u1 Gene Detail
Summary
  • Symbol
    Sdr39u1
  • Name
    short chain dehydrogenase/reductase family 39U, member 1
  • Synonyms
    2310014G06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916876
    NCBI Gene: 654795
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:56134740-56137750 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 28.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    49 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916876
 protein coding gene Chr14:56134740-56137802 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021377
 protein coding gene Chr14:49956881-49959827 (-)
A/J MGP_AJ_G0021336
 protein coding gene Chr14:48945691-48948637 (-)
AKR/J MGP_AKRJ_G0021312
 protein coding gene Chr14:50713793-50716739 (-)
BALB/cJ MGP_BALBcJ_G0021340
 protein coding gene Chr14:48919995-48922941 (-)
C3H/HeJ MGP_C3HHeJ_G0021120
 protein coding gene Chr14:50396701-50399647 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021778
 protein coding gene Chr14:52457250-52460196 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019325
 protein coding gene Chr14:47309050-47312169 (-)
CAST/EiJ MGP_CASTEiJ_G0020639
 protein coding gene Chr14:46655800-46658750 (-)
CBA/J MGP_CBAJ_G0021087
 protein coding gene Chr14:54019518-54022464 (-)
DBA/2J MGP_DBA2J_G0021208
 protein coding gene Chr14:48666641-48669588 (-)
FVB/NJ MGP_FVBNJ_G0021190
 protein coding gene Chr14:48115093-48118039 (-)
LP/J MGP_LPJ_G0021282
 protein coding gene Chr14:50995619-50998565 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021214
 protein coding gene Chr14:53370240-53373186 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021805
 protein coding gene Chr14:49887593-49890539 (-)
PWK/PhJ MGP_PWKPhJ_G0020386
 protein coding gene Chr14:45203699-45206645 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020214
 protein coding gene Chr14:45878606-45881561 (-)
WSB/EiJ MGP_WSBEiJ_G0020692
 protein coding gene Chr14:50167107-50170053 (-)



Homology
more
  • Human Ortholog
    SDR39U1, short chain dehydrogenase/reductase family 39U member 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SDR39U1, short chain dehydrogenase/reductase family 39U member 1
  • Synonyms
    C14orf124, HCDI
  • Links
    NCBI Gene ID: 56948
    neXtProt AC: NX_Q9NRG7
    UniProt: Q9NRG7

  • Chr Location
    14q12; chr14:24439766-24442905 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022223 Ensembl Gene Model | MGI Sequence Detail 3011 C57BL/6J ±  kb
transcript ENSMUST00000111325 Ensembl | MGI Sequence Detail 1255 Not Applicable  
polypeptide ENSMUSP00000106957 Ensembl | MGI Sequence Detail 293 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
References
more
  • Summaries
    All 26
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory