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Smco1 Gene Detail
Summary
  • Symbol
    Smco1
  • Name
    single-pass membrane protein with coiled-coil domains 1
  • Synonyms
    2310010M20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916826
    NCBI Gene: 69576
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:32271609-32274779 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 22.50 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    4 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916826
protein coding gene Chr16:32271468-32274781 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022734
protein coding gene Chr16:30324381-30329895 (+)
A/J MGP_AJ_G0022699
protein coding gene Chr16:28895191-28898339 (+)
AKR/J MGP_AKRJ_G0022672
protein coding gene Chr16:29946654-29950683 (+)
BALB/cJ MGP_BALBcJ_G0022701
protein coding gene Chr16:29047082-29050402 (+)
C3H/HeJ MGP_C3HHeJ_G0022466
protein coding gene Chr16:30076547-30079844 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023150
protein coding gene Chr16:30965550-30968841 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020668
protein coding gene Chr16:29266132-29269605 (+)
CAST/EiJ MGP_CASTEiJ_G0021994
protein coding gene Chr16:30199687-30202956 (+)
CBA/J MGP_CBAJ_G0022436
protein coding gene Chr16:32212594-32217052 (+)
DBA/2J MGP_DBA2J_G0022569
protein coding gene Chr16:28749386-28752652 (+)
FVB/NJ MGP_FVBNJ_G0022544
protein coding gene Chr16:28730918-28734226 (+)
LP/J MGP_LPJ_G0022636
protein coding gene Chr16:30104202-30108411 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022563
protein coding gene Chr16:31668796-31672120 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023162
protein coding gene Chr16:29924769-29928964 (+)
PWK/PhJ MGP_PWKPhJ_G0021733
protein coding gene Chr16:29065717-29069241 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021564
protein coding gene Chr16:29720897-29725840 (+)
WSB/EiJ MGP_WSBEiJ_G0022038
protein coding gene Chr16:29870008-29873267 (+)



Homology
more
  • Human Ortholog
    SMCO1, single-pass membrane protein with coiled-coil domains 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SMCO1, single-pass membrane protein with coiled-coil domains 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C3orf43
  • Links
    NCBI Gene ID: 255798
    neXtProt AC: NX_Q147U7
    UniProt: Q147U7

  • Chr Location
    3q29; chr3:196506877-196515366 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69576 NCBI Gene Model | MGI Sequence Detail 3171 C57BL/6J ±  kb
transcript NM_183283 RefSeq | MGI Sequence Detail 1267 C57BL/6  
polypeptide Q8CEZ1 UniProt | EBI | MGI Sequence Detail 214 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR027875 Protein of unknown function DUF4547
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory