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Capns2 Gene Detail
Summary
  • Symbol
    Capns2
  • Name
    calpain, small subunit 2
  • Synonyms
    2310005G05Rik, 30K-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916793
    NCBI Gene: 69543
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:92901407-92902411 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 44.99 cM, cytoband C5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    81 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916793
protein coding gene Chr8:92901395-92902411 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033938
protein coding gene Chr8:94220358-94221358 (+)
A/J MGP_AJ_G0033921
protein coding gene Chr8:90504479-90505479 (+)
AKR/J MGP_AKRJ_G0033847
protein coding gene Chr8:93051191-93052191 (+)
BALB/cJ MGP_BALBcJ_G0033913
protein coding gene Chr8:90661365-90662365 (+)
C3H/HeJ MGP_C3HHeJ_G0033623
protein coding gene Chr8:93763034-93764034 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034434
protein coding gene Chr8:97688392-97689392 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031375
protein coding gene Chr8:84432908-84433908 (+)
CAST/EiJ MGP_CASTEiJ_G0032955
protein coding gene Chr8:93325455-93326455 (+)
CBA/J MGP_CBAJ_G0033599
protein coding gene Chr8:100937130-100938130 (+)
DBA/2J MGP_DBA2J_G0033753
protein coding gene Chr8:90048578-90049578 (+)
FVB/NJ MGP_FVBNJ_G0033700
protein coding gene Chr8:88988011-88989011 (+)
LP/J MGP_LPJ_G0033845
protein coding gene Chr8:94343608-94344608 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033742
protein coding gene Chr8:103289009-103290009 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034452
protein coding gene Chr8:93165186-93166186 (+)
PWK/PhJ MGP_PWKPhJ_G0032657
protein coding gene Chr8:89400226-89401226 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032494
protein coding gene Chr8:92016837-92017842 (+)
WSB/EiJ MGP_WSBEiJ_G0033067
protein coding gene Chr8:93626999-93627999 (+)



Homology
more
  • Human Ortholog
    CAPNS2, calpain small subunit 2
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CAPNS2, calpain small subunit 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CSS2
  • Links
    NCBI Gene ID: 84290
    neXtProt AC: NX_Q96L46
    UniProt: Q96L46

  • Chr Location
    16q12.2; chr16:55566672-55567680 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078144 Ensembl Gene Model | MGI Sequence Detail 1005 C57BL/6J ±  kb
transcript ENSMUST00000104947 Ensembl | MGI Sequence Detail 1005 Not Applicable  
polypeptide ENSMUSP00000100553 Ensembl | MGI Sequence Detail 247 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Gene Ontology 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:125385 Hata S, et al., Stomach-specific calpain, nCL-2/calpain 8, is active without calpain regulatory subunit and oligomerizes through C2-like domains. J Biol Chem. 2007 Sep 21;282(38):27847-56

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory