About   Help   FAQ
Trnp1 Gene Detail
Summary
  • Symbol
    Trnp1
  • Name
    TMF1-regulated nuclear protein 1
  • Synonyms
    2300002D11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916789
    NCBI Gene: 69539
Location & Maps
more
  • Sequence Map
    Chr4:133491100-133498550 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      7451 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 66.25 cM
  • Detailed Genetic Map ± 1 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    TRNP1, TMF1-regulated nuclear protein 1
  • Vertebrate Orthologs
    6
  • Human Ortholog
    TRNP1, TMF1-regulated nuclear protein 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C1orf225, TNRP
  • Links
    NCBI Gene ID: 388610
    neXtProt AC: NX_Q6NT89

  • Chr Location
    1p36.11; chr1:26993667-27000886 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    2
  • Gene trapped
    3
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Trnp1
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000011157 VEGA Gene Model | MGI Sequence Detail 7451 C57BL/6J ±  kb
transcript OTTMUST00000026140 VEGA | MGI Sequence Detail 1654 Not Applicable  
polypeptide OTTMUSP00000051116 VEGA | MGI Sequence Detail 223 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    109 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000016688 TMF-regulated nuclear protein
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Developmental Gene Expression 5
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:226008 de Juan Romero C, et al., Discrete domains of gene expression in germinal layers distinguish the development of gyrencephaly. EMBO J. 2015 Jul 14;34(14):1859-74

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
05/24/2016
MGI 6.04
The Jackson Laboratory