1700029N11Rik Gene Detail

Summary

• Symbol
  1700029N11Rik
• Name
  RIKEN cDNA 1700029N11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916741
  NCBI Gene: 69491
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:44593203-44611043 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  503 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916741	lncRNA gene	Chr13:44593146-44622506 (+)
129S1/SvImJ	ENSMUSG00200036723	lncRNA gene	Chr13:41850873-41880525 (+)
A/J	ENSMUSG00195031142	lncRNA gene	Chr13:40910877-40940528 (+)
AKR/J	ENSMUSG00220009307	lncRNA gene	Chr13:40708414-40738233 (+)
BALB/cJ	ENSMUSG00180008707	lncRNA gene	Chr13:41217487-41247136 (+)
C3H/HeJ	ENSMUSG00175030685	lncRNA gene	Chr13:41181866-41211516 (+)
C57BL/6NJ	ENSMUSG00215006352	lncRNA gene	Chr13:41336349-41366154 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004955	lincRNA gene	Chr13:39704819-39723126 (+)
CAST/EiJ	ENSTCUG00005032610	lncRNA gene	Chr13:41242422-41272118 (+)
CBA/J	ENSMUSG00210028897	lncRNA gene	Chr13:41187428-41217071 (+)
DBA/2J	ENSMUSG00185032261	lncRNA gene	Chr13:41991488-42021296 (+)
FVB/NJ	ENSMUSG00205012310	lncRNA gene	Chr13:40939387-40969037 (+)
JF1/MsJ	ENSUMUG00000016471	lncRNA gene	Chr13:41530625-41559981 (+)
LP/J	ENSMUSG00230031027	lncRNA gene	Chr13:51319753-51349403 (+)
NOD/ShiLtJ	ENSMUSG00190012081	lncRNA gene	Chr13:41390401-41420205 (+)
NZO/HlLtJ	ENSMUSG00225036319	lncRNA gene	Chr13:45086976-45116630 (+)
PWK/PhJ	ENSLUMG00010021100	lncRNA gene	Chr13:40375063-40404701 (+)
SPRET/EiJ	ENSMSPG00010032253	lncRNA gene	Chr13:40443481-40474427 (+)
WSB/EiJ	ENSIUOG00005027417	lncRNA gene	Chr13:40521990-40551980 (+)

Homology

• Gene Tree
  1700029N11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700029N11Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  62
• RefSeq
  1

• Ensembl
  ENSMUSG00000098144 (Evidence)
• NCBI Gene
  69491

Representative Sequences			Length	Strain/Species
genomic	69491	NCBI Gene Model | MGI Sequence Detail	17841	C57BL/6J
transcript	NR_045489	RefSeq | MGI Sequence Detail	565	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700029N11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119530	Chr13:44593198-44593208 (+)	0 bp