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Nup35
Gene Detail
Symbol

Name
ID
Nup35
nucleoporin 35
MGI:1916732
Synonyms
2310006I24Rik, 5330402E05Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 2
48.31 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:80617236-80658906 bp, + strand
From VEGA annotation of GRCm38

  41671 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:44517  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: NUP35
Protein SuperFamily: nucleoporin, NUP53 type
Gene Tree: Nup35

Human
homologs
NUP35, nucleoporin 35kDa
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 129401
neXtProt AC: NX_Q8NFH5

Human Synonyms: MP44, MP-44, NP44, NUP53

Human Chr (Location): 2q32.1; chr2:183117490-183161684 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(26) : Gene trapped(18) Targeted(7) Transgenic(1)
Genomic Mutations involving Nup35 (2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Nup35 interacts with 159 markers (Mir7-1, Mir10a, Mir17, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process biological_process
Component intermediate filament cytoskeleton, intracellular membrane-bounded organelle, ...
Function protein homodimerization activity
External Resources: FuncBase
Expression
cDNA source data(64)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase nup35 ; ZFIN nup35    NEW 
Molecular
reagents
All nucleic(65) cDNA(65)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000018807 (Evidence)
Ensembl Gene Model ENSMUSG00000026999 (Evidence)
Entrez Gene 69482 (Evidence)
UniGene 29200
DFCI TC1660238, TC1624632, TC1652091, TC1575872
DoTS DT.55115824, DT.492476, DT.103575740, DT.102543679
Consensus CDS Project CCDS16179.1
International Mouse Phenotyping Consortium Status Nup35
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018807 VEGA Gene Model | MGI Sequence Detail 41671 C57BL/6J ±  kb
transcript OTTMUST00000032318 VEGA | MGI Sequence Detail 1559 Not Applicable 
polypeptide OTTMUSP00000014349 VEGA | MGI Sequence Detail 325 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(4)
Polymorphisms
SNPs within 2kb(398 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000011516 nucleoporin NUP53
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)
Other
accession IDs
MGI:1923922

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory