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1700029J07Rik Gene Detail
Summary
  • Symbol
    1700029J07Rik
  • Name
    RIKEN cDNA 1700029J07 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916729
    NCBI Gene: 69479
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:45953606-45975252 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 25.94 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    266 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916729
protein coding gene Chr8:45939366-45975456 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033580
protein coding gene Chr8:45022122-45057828 (-)
A/J MGP_AJ_G0033562
protein coding gene Chr8:43294042-43315934 (-)
AKR/J MGP_AKRJ_G0033487
protein coding gene Chr8:44560344-44588275 (-)
BALB/cJ MGP_BALBcJ_G0033559
protein coding gene Chr8:43473927-43495785 (-)
C3H/HeJ MGP_C3HHeJ_G0033268
protein coding gene Chr8:45080868-45117068 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034075
protein coding gene Chr8:46730195-46756535 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031024
protein coding gene Chr8:39566486-39587773 (-)
CAST/EiJ MGP_CASTEiJ_G0032594
protein coding gene Chr8:44527238-44552064 (-)
CBA/J MGP_CBAJ_G0033247
protein coding gene Chr8:48620535-48648157 (-)
DBA/2J MGP_DBA2J_G0033400
protein coding gene Chr8:43101343-43124241 (-)
FVB/NJ MGP_FVBNJ_G0033341
protein coding gene Chr8:42598913-42621567 (-)
LP/J MGP_LPJ_G0033488
protein coding gene Chr8:45038066-45062196 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033386
protein coding gene Chr8:48691693-48720310 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034093
protein coding gene Chr8:44722464-44748792 (-)
PWK/PhJ MGP_PWKPhJ_G0032302
protein coding gene Chr8:42624352-42646805 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032138
protein coding gene Chr8:43876797-43900958 (-)
WSB/EiJ MGP_WSBEiJ_G0032710
protein coding gene Chr8:44975452-45000109 (-)



Homology
more
  • Human Ortholog
    C4orf47, chromosome 4 open reading frame 47
  • Vertebrate Orthologs
    10
  • Human Ortholog
    C4orf47, chromosome 4 open reading frame 47
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 441054
    neXtProt AC: NX_A7E2U8
    UniProt: A7E2U8

  • Chr Location
    4q35.1; chr4:185405227-185449828 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000071103 Ensembl Gene Model | MGI Sequence Detail 21647 C57BL/6J ±  kb
transcript ENSMUST00000095323 Ensembl | MGI Sequence Detail 2740 Not Applicable  
polypeptide ENSMUSP00000092961 Ensembl | MGI Sequence Detail 316 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR029358 Protein of unknown function DUF4586
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory