1700028E10Rik Gene Detail

Summary

• Symbol
  1700028E10Rik
• Name
  RIKEN cDNA 1700028E10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916713
  NCBI Gene: 625175
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:151292140-151337548 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 90.02 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  200 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916713	lncRNA gene	Chr5:151292140-151355583 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015622	unclassified non-coding RNA gene	Chr5:157376733-157441127 (+)
A/J	MGP_AJ_G0015598	unclassified non-coding RNA gene	Chr5:150610118-150678150 (+)
AKR/J	MGP_AKRJ_G0015562	unclassified non-coding RNA gene	Chr5:155260645-155324005 (+)
BALB/cJ	MGP_BALBcJ_G0015560	unclassified non-coding RNA gene	Chr5:151870217-151935305 (+)
C3H/HeJ	MGP_C3HHeJ_G0015382	unclassified non-coding RNA gene	Chr5:156255089-156330381 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016014	unclassified non-coding RNA gene	Chr5:163075014-163143739 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013748	unclassified non-coding RNA gene	Chr5:144922973-144986299 (+)
CAST/EiJ	MGP_CASTEiJ_G0014938	unclassified non-coding RNA gene	Chr5:155960455-156032142 (+)
CBA/J	MGP_CBAJ_G0015363	unclassified non-coding RNA gene	Chr5:169954669-170020409 (+)
DBA/2J	MGP_DBA2J_G0015457	unclassified non-coding RNA gene	Chr5:150251869-150316966 (+)
FVB/NJ	MGP_FVBNJ_G0015464	unclassified non-coding RNA gene	Chr5:149507658-149570880 (+)
LP/J	MGP_LPJ_G0015538	unclassified non-coding RNA gene	Chr5:157992429-158067190 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015487	unclassified non-coding RNA gene	Chr5:171973180-172040501 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016056	unclassified non-coding RNA gene	Chr5:155220723-155284381 (+)
PWK/PhJ	MGP_PWKPhJ_G0014723	unclassified non-coding RNA gene	Chr5:149438565-149502786 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014511	unclassified non-coding RNA gene	Chr5:152511758-152576518 (+)
WSB/EiJ	MGP_WSBEiJ_G0015042	unclassified non-coding RNA gene	Chr5:156038397-156103958 (+)

Homology

• Gene Tree
  1700028E10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  11
• Endonuclease-mediated
  1
• Gene trapped
  10
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000097321 (Evidence)
• NCBI Gene
  625175

Representative Sequences			Length	Strain/Species
genomic	625175	NCBI Gene Model | MGI Sequence Detail	45409	C57BL/6J
transcript	NR_045699	RefSeq | MGI Sequence Detail	2068	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

Other
Accession IDs

MGI:3779608

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1700028E10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49976	Chr5:151292148-151292188 (+)	28 bp
Tssr49977	Chr5:151292457-151292478 (+)	328 bp
Tssr49978	Chr5:151294839-151294843 (+)	2,701 bp
Tssr49979	Chr5:151323570-151323611 (+)	31,451 bp
Tssr49980	Chr5:151323704-151323715 (+)	31,570 bp
Tssr49981	Chr5:151324578-151324599 (+)	32,449 bp