1700027J07Rik Gene Detail

Summary

• Symbol
  1700027J07Rik
• Name
  RIKEN cDNA 1700027J07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916693
  NCBI Gene: 69443
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:43622154-43641832 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  695 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916693	lncRNA gene	Chr10:43618796-43708903 (+)
129S1/SvImJ	ENSMUSG00200007228	lncRNA gene	Chr10:40508887-40528870 (+)
A/J	ENSMUSG00195003274	lncRNA gene	Chr10:40789390-40809418 (+)
AKR/J	ENSMUSG00220006191	lncRNA gene	Chr10:40475200-40495232 (+)
BALB/cJ	ENSMUSG00180012604	lncRNA gene	Chr10:40873334-40893361 (+)
C3H/HeJ	ENSMUSG00175010092	lncRNA gene	Chr10:40666087-40686112 (+)
C57BL/6NJ	ENSMUSG00215002399	lncRNA gene	Chr10:40416113-40436141 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008608	lncRNA gene	Chr10:40872190-40892817 (+)
CBA/J	ENSMUSG00210008450	lncRNA gene	Chr10:40561780-40581800 (+)
DBA/2J	ENSMUSG00185003288	lncRNA gene	Chr10:40713289-40733317 (+)
FVB/NJ	ENSMUSG00205005135	lncRNA gene	Chr10:40629682-40649707 (+)
JF1/MsJ	ENSUMUG00000026365	lncRNA gene	Chr10:40522149-40542812 (+)
LP/J	ENSMUSG00230006183	lncRNA gene	Chr10:42506931-42526913 (+)
NOD/ShiLtJ	ENSMUSG00190005789	lncRNA gene	Chr10:40841531-40861559 (+)
NZO/HlLtJ	ENSMUSG00225019392	lncRNA gene	Chr10:46803265-46823292 (+)
PWK/PhJ	ENSLUMG00010004675	lncRNA gene	Chr10:40629919-40650410 (+)
SPRET/EiJ	ENSMSPG00010013105	lncRNA gene	Chr10:41665951-41696179 (+)
WSB/EiJ	ENSIUOG00005015455	lncRNA gene	Chr10:40399369-40419404 (+)

Homology

• Gene Tree
  1700027J07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700027J07Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000111422 (Evidence)
• NCBI Gene
  69443

Representative Sequences			Length	Strain/Species
genomic	69443	NCBI Gene Model | MGI Sequence Detail	19679	C57BL/6J
transcript	NR_040581	RefSeq | MGI Sequence Detail	1060	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700027J07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93153	Chr10:43622536-43622552 (+)	390 bp