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Cdhr4 Gene Detail
Summary
  • Symbol
    Cdhr4
  • Name
    cadherin-related family member 4
  • Synonyms
    1700021K14Rik, Cdh29, D330022A01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916648
    NCBI Gene: 69398
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:107992497-107999684 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 59.07 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916648
protein coding gene Chr9:107992436-107999684 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035279
protein coding gene Chr9:109908785-109915972 (+)
A/J MGP_AJ_G0035258
protein coding gene Chr9:105896559-105903746 (+)
AKR/J MGP_AKRJ_G0035190
protein coding gene Chr9:108537479-108544665 (+)
BALB/cJ MGP_BALBcJ_G0035252
protein coding gene Chr9:105568478-105575665 (+)
C3H/HeJ MGP_C3HHeJ_G0034962
protein coding gene Chr9:108934690-108941877 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035772
protein coding gene Chr9:112882646-112889833 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032670
protein coding gene Chr9:103329460-103336816 (+)
CAST/EiJ MGP_CASTEiJ_G0034273
protein coding gene Chr9:108892304-108899482 (+)
CBA/J MGP_CBAJ_G0034930
protein coding gene Chr9:116879119-116886318 (+)
DBA/2J MGP_DBA2J_G0035091
protein coding gene Chr9:105353158-105360345 (+)
FVB/NJ MGP_FVBNJ_G0035039
protein coding gene Chr9:104116891-104124078 (+)
LP/J MGP_LPJ_G0035167
protein coding gene Chr9:110103243-110110414 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035078
protein coding gene Chr9:118472716-118479903 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035793
protein coding gene Chr9:108815872-108823059 (+)
PWK/PhJ MGP_PWKPhJ_G0033980
protein coding gene Chr9:105673474-105680656 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033815
protein coding gene Chr9:108880345-108887553 (+)
WSB/EiJ MGP_WSBEiJ_G0034394
protein coding gene Chr9:108695153-108702340 (+)



Homology
more
  • Human Ortholog
    CDHR4, cadherin related family member 4
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CDHR4, cadherin related family member 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDH29, PRO34300
  • Links
    NCBI Gene ID: 389118
    neXtProt AC: NX_A6H8M9
    UniProt: A6H8M9

  • Chr Location
    3p21.31; chr3:49790732-49802741 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032595 Ensembl Gene Model | MGI Sequence Detail 7188 C57BL/6J ±  kb
transcript ENSMUST00000177173 Ensembl | MGI Sequence Detail 2480 Not Applicable  
polypeptide ENSMUSP00000135184 Ensembl | MGI Sequence Detail 783 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
Other
Accession IDs
less
MGI:2143196, MGI:2443519
References
more
  • Summaries
    All 24
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/19/2019
MGI 6.13
The Jackson Laboratory