1700010J16Rik Gene Detail

Summary

• Symbol
  1700010J16Rik
• Name
  RIKEN cDNA 1700010J16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916605
  NCBI Gene: 69355
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:112562831-112621504 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1705 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916605	lncRNA gene	Chr10:112562668-112621507 (+)
129S1/SvImJ	ENSMUSG00200011061	lncRNA gene	Chr10:108980686-109039396 (+)
A/J	ENSMUSG00195008829	lncRNA gene	Chr10:109399604-109458316 (+)
AKR/J	ENSMUSG00220025745	lncRNA gene	Chr10:108976937-109035655 (+)
BALB/cJ	ENSMUSG00180025459	lncRNA gene	Chr10:109416772-109475490 (+)
C3H/HeJ	ENSMUSG00175015799	lncRNA gene	Chr10:109346023-109404728 (+)
C57BL/6NJ	ENSMUSG00215012916	lncRNA gene	Chr10:109062838-109121553 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004675	lincRNA gene	Chr10:105610825-105666858 (+)
CAST/EiJ	ENSTCUG00005011701	lncRNA gene	Chr10:108368416-108430438 (+)
CBA/J	ENSMUSG00210011851	lncRNA gene	Chr10:109216626-109275348 (+)
DBA/2J	ENSMUSG00185025303	lncRNA gene	Chr10:109331567-109390278 (+)
FVB/NJ	ENSMUSG00205011022	lncRNA gene	Chr10:108677287-108736001 (+)
JF1/MsJ	ENSUMUG00000011145	lncRNA gene	Chr10:110625079-110695476 (+)
LP/J	ENSMUSG00230026180	lncRNA gene	Chr10:111291173-111349879 (+)
NOD/ShiLtJ	ENSMUSG00190021440	lncRNA gene	Chr10:109447404-109506111 (+)
NZO/HlLtJ	ENSMUSG00225018041	lncRNA gene	Chr10:115545533-115604249 (+)
PWK/PhJ	ENSLUMG00010014509	lncRNA gene	Chr10:109011491-109070316 (+)
SPRET/EiJ	ENSMSPG00010006026	lncRNA gene	Chr10:110857901-110922167 (+)
WSB/EiJ	ENSIUOG00005010899	lncRNA gene	Chr10:109074172-109132993 (+)

Homology

• Gene Tree
  1700010J16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700010J16Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1

• Ensembl
  ENSMUSG00000100314 (Evidence)
• NCBI Gene
  69355

Representative Sequences			Length	Strain/Species
genomic	69355	NCBI Gene Model | MGI Sequence Detail	58674	C57BL/6J
transcript	NR_040579	RefSeq | MGI Sequence Detail	887	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700010J16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95798	Chr10:112562818-112562832 (+)	-6 bp