About   Help   FAQ
Slc38a4 Gene Detail
Summary
  • Symbol
    Slc38a4
  • Name
    solute carrier family 38, member 4
  • Synonyms
    1110012E16Rik, 1700012A18Rik, Ata3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916604
    NCBI Gene: 69354
  • Alliance
  • Transcription Start Sites
    14 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:96994823-97055956 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 52.77 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    366 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916604
protein coding gene Chr15:96994820-97055956 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022273
protein coding gene Chr15:98616795-98654242 (-)
A/J MGP_AJ_G0022232
protein coding gene Chr15:94733750-94770081 (-)
AKR/J MGP_AKRJ_G0022207
protein coding gene Chr15:97598495-97661044 (-)
BALB/cJ MGP_BALBcJ_G0022238
protein coding gene Chr15:94945075-95007136 (-)
C3H/HeJ MGP_C3HHeJ_G0022008
protein coding gene Chr15:97637729-97702883 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022683
protein coding gene Chr15:102257675-102320245 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020209
protein coding gene Chr15:90704060-90740140 (-)
CAST/EiJ MGP_CASTEiJ_G0021530
protein coding gene Chr15:98435063-98551920 (-)
CBA/J MGP_CBAJ_G0021975
protein coding gene Chr15:105698256-105759381 (-)
DBA/2J MGP_DBA2J_G0022102
protein coding gene Chr15:94179366-94240447 (-)
FVB/NJ MGP_FVBNJ_G0022081
protein coding gene Chr15:93169332-93232919 (-)
LP/J MGP_LPJ_G0022173
protein coding gene Chr15:98733598-98794674 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022101
protein coding gene Chr15:109856059-109893844 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022698
protein coding gene Chr15:97721741-97759094 (-)
PWK/PhJ MGP_PWKPhJ_G0021271
protein coding gene Chr15:94190890-94303164 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021105
protein coding gene Chr15:97486449-97553622 (-)
WSB/EiJ MGP_WSBEiJ_G0021579
protein coding gene Chr15:98248424-98286541 (-)



Homology
more
  • Human Ortholog
    SLC38A4, solute carrier family 38 member 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLC38A4, solute carrier family 38 member 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATA3, NAT3, PAAT, SNAT4
  • Links
    NCBI Gene ID: 55089
    neXtProt AC: NX_Q969I6
    UniProt: Q969I6

  • Chr Location
    12q13.11; chr12:46764761-46832422 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    32 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69354 NCBI Gene Model | MGI Sequence Detail 61134 C57BL/6J ±  kb
transcript NM_001358060 RefSeq | MGI Sequence Detail 3980 C57BL/6  
polypeptide Q8R1S9 UniProt | EBI | MGI Sequence Detail 547 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 158
    cDNA 154
    Primer pair 4

    Microarray probesets 4
Other
Accession IDs
less
MGI:1923562
References
more
  • Summaries
    All 71
    Developmental Gene Expression 10
    Diseases 1
    Gene Ontology 4
    Phenotypes 32
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:255082 Kurogi S, et al., Development of an efficient screening system to identify novel bone metabolism-related genes using the exchangeable gene trap mutagenesis mouse models. Sci Rep. 2017 Jan 20;7:40692

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
03/13/2019
MGI 6.13
The Jackson Laboratory