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Smim23 Gene Detail
Summary
  • Symbol
    Smim23
  • Name
    small integral membrane protein 23
  • Synonyms
    1700008A04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916601
    NCBI Gene: 69351
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:32820376-32824594 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 19.11 cM, cytoband A5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    35 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916601
protein coding gene Chr11:32818529-32824605 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018139
protein coding gene Chr11:31072203-31079642 (-)
A/J MGP_AJ_G0018112
protein coding gene Chr11:29893047-29898692 (-)
AKR/J MGP_AKRJ_G0018076
protein coding gene Chr11:30830674-30836612 (-)
BALB/cJ MGP_BALBcJ_G0018081
protein coding gene Chr11:30074112-30080163 (-)
C3H/HeJ MGP_C3HHeJ_G0017894
protein coding gene Chr11:30775563-30782233 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018535
protein coding gene Chr11:32087643-32093987 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016190
protein coding gene Chr11:28409630-28416616 (-)
CAST/EiJ MGP_CASTEiJ_G0017458
protein coding gene Chr11:30831057-30837506 (-)
CBA/J MGP_CBAJ_G0017867
protein coding gene Chr11:33608058-33615947 (-)
DBA/2J MGP_DBA2J_G0017977
protein coding gene Chr11:29675573-29680922 (-)
FVB/NJ MGP_FVBNJ_G0017971
protein coding gene Chr11:29506737-29513143 (-)
LP/J MGP_LPJ_G0018049
protein coding gene Chr11:31332395-31339364 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017995
protein coding gene Chr11:34579264-34585773 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018574
protein coding gene Chr11:30973785-30980312 (-)
PWK/PhJ MGP_PWKPhJ_G0017239
protein coding gene Chr11:29840106-29846111 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017031
protein coding gene Chr11:30670501-30677582 (-)
WSB/EiJ MGP_WSBEiJ_G0017507
protein coding gene Chr11:30602357-30607882 (-)



Homology
more
  • Human Ortholog
    SMIM23, small integral membrane protein 23
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SMIM23, small integral membrane protein 23
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C5orf50
  • Links
    NCBI Gene ID: 644994
    neXtProt AC: NX_A6NLE4
    UniProt: A6NLE4

  • Chr Location
    5q35.1; chr5:171772637-171791136 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Targeted
    2
  • Genomic Mutations
    1 involving Smim23
  • Find Mice (IMSR)
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69351 NCBI Gene Model | MGI Sequence Detail 4219 C57BL/6J ±  kb
transcript NM_027050 RefSeq | MGI Sequence Detail 606 C57BL/6  
polypeptide Q9DAL0 UniProt | EBI | MGI Sequence Detail 136 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR027880 Protein of unknown function DUF4635
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 3
References
more
  • Summaries
    All 25
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:234235 Miyata H, et al., Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory