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Ccdc54 Gene Detail
Summary
  • Symbol
    Ccdc54
  • Name
    coiled-coil domain containing 54
  • Synonyms
    1700007N18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916589
    NCBI Gene: 69339
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:50589859-50591154 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 31.50 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    56 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916589
protein coding gene Chr16:50589857-50591154 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022876
protein coding gene Chr16:49513010-49514305 (-)
A/J MGP_AJ_G0022843
protein coding gene Chr16:47344349-47345644 (-)
AKR/J MGP_AKRJ_G0022815
protein coding gene Chr16:48921720-48923015 (-)
BALB/cJ MGP_BALBcJ_G0022843
protein coding gene Chr16:47421639-47422934 (-)
C3H/HeJ MGP_C3HHeJ_G0022606
protein coding gene Chr16:48978687-48979982 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023291
protein coding gene Chr16:50777805-50779100 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020803
protein coding gene Chr16:47398836-47400131 (-)
CAST/EiJ MGP_CASTEiJ_G0022132
protein coding gene Chr16:49334851-49336146 (-)
CBA/J MGP_CBAJ_G0022579
protein coding gene Chr16:52787409-52788704 (-)
DBA/2J MGP_DBA2J_G0022711
protein coding gene Chr16:47075632-47076927 (-)
FVB/NJ MGP_FVBNJ_G0022686
protein coding gene Chr16:46936287-46937582 (-)
LP/J MGP_LPJ_G0022778
protein coding gene Chr16:49299343-49300638 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022704
protein coding gene Chr16:52523090-52524385 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023306
protein coding gene Chr16:48976234-48977529 (-)
PWK/PhJ MGP_PWKPhJ_G0021872
protein coding gene Chr16:47424452-47425747 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021702
protein coding gene Chr16:48809247-48810541 (-)
WSB/EiJ MGP_WSBEiJ_G0022177
protein coding gene Chr16:48975234-48976529 (-)



Homology
more
  • Human Ortholog
    CCDC54, coiled-coil domain containing 54
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CCDC54, coiled-coil domain containing 54
    Orthology source: HomoloGene, HGNC
  • Synonyms
    NYD-SP17, SP17
  • Links
    NCBI Gene ID: 84692
    neXtProt AC: NX_Q8NEL0
    UniProt: Q8NEL0

  • Chr Location
    3q13.12; chr3:107377341-107378634 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69339 NCBI Gene Model | MGI Sequence Detail 1296 C57BL/6J ±  kb
transcript NM_027046 RefSeq | MGI Sequence Detail 1296 C57BL/6  
polypeptide Q9DAL3 UniProt | EBI | MGI Sequence Detail 329 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 4
Other
Accession IDs
less
MGI:2146467, MGI:2146678
References
more
  • Summaries
    All 19
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/01/2019
MGI 6.14
The Jackson Laboratory