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1700007K13Rik Gene Detail
Summary
  • Symbol
    1700007K13Rik
  • Name
    RIKEN cDNA 1700007K13 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916577
    NCBI Gene: 69327
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:28462001-28466324 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 19.38 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    36 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916577
protein coding gene Chr2:28462001-28466332 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025521
protein coding gene Chr2:26521547-26525913 (-)
A/J MGP_AJ_G0025498
protein coding gene Chr2:25520790-25525113 (-)
AKR/J MGP_AKRJ_G0025468
protein coding gene Chr2:26361540-26365860 (-)
BALB/cJ MGP_BALBcJ_G0025494
protein coding gene Chr2:25640323-25644650 (-)
C3H/HeJ MGP_C3HHeJ_G0025255
protein coding gene Chr2:26283808-26288146 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025938
protein coding gene Chr2:27422170-27426496 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023349
protein coding gene Chr2:24324341-24328982 (-)
CAST/EiJ MGP_CASTEiJ_G0024718
protein coding gene Chr2:26186754-26191039 (-)
CBA/J MGP_CBAJ_G0025233
protein coding gene Chr2:28351099-28355419 (-)
DBA/2J MGP_DBA2J_G0025366
protein coding gene Chr2:25326524-25330846 (-)
FVB/NJ MGP_FVBNJ_G0025328
protein coding gene Chr2:25103788-25112041 (-)
LP/J MGP_LPJ_G0025452
protein coding gene Chr2:26472286-26476639 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025359
protein coding gene Chr2:28354853-28359184 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025997
protein coding gene Chr2:26279423-26283740 (-)
PWK/PhJ MGP_PWKPhJ_G0024466
protein coding gene Chr2:25133200-25137596 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024266
protein coding gene Chr2:26411416-26415713 (-)
WSB/EiJ MGP_WSBEiJ_G0024787
protein coding gene Chr2:26410374-26414693 (-)



Homology
more
  • Human Ortholog
    C9orf116, chromosome 9 open reading frame 116
  • Vertebrate Orthologs
    7
  • Human Ortholog
    C9orf116, chromosome 9 open reading frame 116
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PIERCE1, RbEST47
  • Links
    NCBI Gene ID: 138162
    neXtProt AC: NX_Q5BN46
    UniProt: Q5BN46

  • Chr Location
    9q34.3; chr9:135495180-135499915 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    33 phenotypes from 2 alleles in 2 genetic backgrounds
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit severe laterality defects, including situs inversus totalis and heterotaxy with randomized situs and left and right isomerisms. Homozygous embryos with isomerisms die in utero due to associated cardiovascular malformations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 69327 NCBI Gene Model | MGI Sequence Detail 4324 C57BL/6J ±  kb
    transcript NM_027040 RefSeq | MGI Sequence Detail 833 Not Specified  
    polypeptide Q5BN45 UniProt | EBI | MGI Sequence Detail 167 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • InterPro Domains
      IPR026507 Uncharacterised protein family UPF0691
    Molecular
    Reagents
    less
    • All nucleic 14
      Genomic 2
      cDNA 10
      Primer pair 2

      Microarray probesets 3
    References
    more
    • Summaries
      All 31
      Developmental Gene Expression 3
      Gene Ontology 2
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:240319 Stauber M, et al., Identification of FOXJ1 effectors during ciliogenesis in the foetal respiratory epithelium and embryonic left-right organiser of the mouse. Dev Biol. 2017 Mar 15;423(2):170-188

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory