1700012B09Rik MGI Mouse Gene Detail - MGI:1916575

Symbol

1700012B09Rik
Name

RIKEN cDNA 1700012B09 gene
Synonyms

1700007P19Rik

Feature Type

protein coding gene
IDs

MGI:1916575
NCBI Gene: 69325
Alliance

gene page
Transcription Start Sites

8 TSS

Sequence Map

Chr9:14667883-14682326 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 9, 4.31 cM, cytoband A3
Mapping Data

2 experiments

SNPs within 2kb

58 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916575	protein coding gene	Chr9:14667883-14682345 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0034354	protein coding gene	Chr9:11709723-11723661 (-)
A/J	MGP_AJ_G0034332	protein coding gene	Chr9:11655844-11670481 (-)
AKR/J	MGP_AKRJ_G0034260	protein coding gene	Chr9:11668906-11682834 (-)
BALB/cJ	MGP_BALBcJ_G0034326	protein coding gene	Chr9:11429843-11443933 (-)
C3H/HeJ	MGP_C3HHeJ_G0034037	protein coding gene	Chr9:11964798-11978888 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0034848	protein coding gene	Chr9:12093467-12110042 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031786	protein coding gene	Chr9:10954467-10968390 (-)
CAST/EiJ	MGP_CASTEiJ_G0033364	protein coding gene	Chr9:11802466-11822329 (-)
CBA/J	MGP_CBAJ_G0034010	protein coding gene	Chr9:12660618-12677452 (-)
DBA/2J	MGP_DBA2J_G0034167	protein coding gene	Chr9:11533871-11548372 (-)
FVB/NJ	MGP_FVBNJ_G0034112	protein coding gene	Chr9:11126430-11141236 (-)
LP/J	MGP_LPJ_G0034253	protein coding gene	Chr9:11808711-11825420 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034156	protein coding gene	Chr9:13703962-13719458 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034867	protein coding gene	Chr9:11675362-11689310 (-)
PWK/PhJ	MGP_PWKPhJ_G0033070	protein coding gene	Chr9:11599281-11618099 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0032906	protein coding gene	Chr9:11777324-11791656 (-)
WSB/EiJ	MGP_WSBEiJ_G0033480	protein coding gene	Chr9:11531964-11548467 (-)

Human Ortholog

C11orf97, chromosome 11 open reading frame 97

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C11orf97, chromosome 11 open reading frame 97
Synonyms

LINC01171
Links

HGNC:49544

NCBI Gene ID: 643037

neXtProt AC: NX_A0A1B0GVM6

UniProt: A0A1B0GVM6
Chr Location

11q21; chr11:94512461-94532123 (+) GRCh38

MGI Vertebrate Homology

1700012B09Rik stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: C11orf97
Gene Tree

1700012B09Rik

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Phenotype Summary

2 phenotypes from 2 alleles in 2 genetic backgrounds
8 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

5
Gene trapped

2
Targeted

3
Find Mice (IMSR)

2 strains or lines available

Mutant knockout mice are viable and fertile, surviving to at least one year of age. Notably, there are no apparent defects in motile or non-motile cilia or ciliated tissues.

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All GO Annotations

6
GO References

4

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

832
Tissues

48
cDNA Data

19
Literature Summary

3

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

43
RefSeq

3
UniProt

4
CCDS

CCDS40536.1

Ensembl

ENSMUSG00000031927 (Evidence)
NCBI Gene

69325

			Length	Strain/Species	Flank
genomic	ENSMUSG00000031927	Ensembl Gene Model \| MGI Sequence Detail	14444	C57BL/6J	± kb
transcript	ENSMUST00000191047	Ensembl \| MGI Sequence Detail	654	Not Applicable
polypeptide	ENSMUSP00000140908	Ensembl \| MGI Sequence Detail	132	Not Applicable

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UniProt

4 Sequences
Protein Ontology

PR:000059662 uncharacterized protein C11orf97

(term hierarchy)
InterPro Domains

IPR040429 Uncharacterized protein C11orf97-like

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All nucleic 23

cDNA 19

Primer pair 4

Microarray probesets 3

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MGI:1922731

Summaries

All 31

Developmental Gene Expression 3

Gene Ontology 4

Phenotypes 8
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:249115 Stauber M, et al., 1700012B09Rik, a FOXJ1 effector gene active in ciliated tissues of the mouse but not essential for motile ciliogenesis. Dev Biol. 2017 Sep 1;429(1):186-199

TSS for 1700012B09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr88202	Chr9:14682501-14682517 (-)	-183 bp
Tssr88201	Chr9:14682485-14682498 (-)	-166 bp
Tssr88200	Chr9:14682467-14682474 (-)	-145 bp
Tssr88199	Chr9:14682452-14682461 (-)	-131 bp
Tssr88198	Chr9:14682437-14682446 (-)	-116 bp
Tssr88197	Chr9:14682300-14682340 (-)	6 bp
Tssr88196	Chr9:14682275-14682296 (-)	40 bp
Tssr88195	Chr9:14682260-14682272 (-)	60 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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