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Hmgb4
Gene Detail
Symbol

Name
ID
Hmgb4
high-mobility group box 4
MGI:1916567
Synonyms
1700001F22Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 4
61.97 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:128260212-128260957 bp, - strand
From VEGA annotation of GRCm38

  746 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:83321  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: Hmgb4

Human
homologs
Human Homolog HMGB4, high mobility group box 4
NCBI Gene ID 127540
neXtProt AC  NX_Q8WW32
Human Synonyms  dJ1007G16.5
Human Chr (Location)  1p35.1; chr1:33860475-33864791 (+)  GRCh38
Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process chromatin remodeling, regulation of transcription, DNA-templated
Component chromosome, nucleus
Function chromatin binding, DNA binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (95)    Tissues (95)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 95
cDNA source data(7)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(7) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000009452 (Evidence)
Ensembl Gene ModelENSMUSG00000048686 (Evidence)
Entrez Gene69317 (Evidence)
DFCITC1639876, TC1595994, TC1596160, TC1577275
DoTSDT.488980, DT.110821152, DT.101391005
NIA Mouse Gene IndexU097447, U074751
Consensus CDS ProjectCCDS18671.1
International Mouse Knockout Project StatusHmgb4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009452 VEGA Gene Model | MGI Sequence Detail 746 C57BL/6J ±  kb
transcript OTTMUST00000021529 VEGA | MGI Sequence Detail 746 Not Applicable 
polypeptide OTTMUSP00000009835 VEGA | MGI Sequence Detail 181 Not Applicable 

For the selected sequences
All sequences(28) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(50 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009071 High mobility group (HMG) box domain
Protein Ontology PR:000008634 high mobility group protein B4
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:171052 Itou J, et al., HMGB factors are required for posterior digit development through integrating signaling pathway activities. Dev Dyn. 2011 May;240(5):1151-62
All references(30)
Other
accession IDs
MGI:2140242

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory