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1700001L19Rik Gene Detail
Summary
  • Symbol
    1700001L19Rik
  • Name
    RIKEN cDNA 1700001L19 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916565
    NCBI Gene: 69315
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:68597439-68614231 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 35.55 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    113 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916565
protein coding gene Chr13:68597421-68614231 (.)
129S1/SvImJ MGP_129S1SvImJ_G0020729
protein coding gene Chr13:68813623-68830328 (+)
A/J MGP_AJ_G0020685
protein coding gene Chr13:66390387-66407121 (+)
AKR/J MGP_AKRJ_G0020660
protein coding gene Chr13:68554254-68570896 (+)
BALB/cJ MGP_BALBcJ_G0020682
protein coding gene Chr13:66932601-66949248 (+)
C3H/HeJ MGP_C3HHeJ_G0020477
protein coding gene Chr13:68247730-68264336 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021119
protein coding gene Chr13:71212792-71229489 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018687
protein coding gene Chr13:63356249-63373278 (+)
CAST/EiJ MGP_CASTEiJ_G0019994
protein coding gene Chr13:67211985-67228622 (+)
CBA/J MGP_CBAJ_G0020435
protein coding gene Chr13:73938421-73955064 (+)
DBA/2J MGP_DBA2J_G0020561
protein coding gene Chr13:66284653-66301313 (+)
FVB/NJ MGP_FVBNJ_G0020541
protein coding gene Chr13:65296359-65312998 (+)
LP/J MGP_LPJ_G0020633
protein coding gene Chr13:69112467-69129032 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020569
protein coding gene Chr13:72424228-72440878 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021158
protein coding gene Chr13:67840349-67857051 (+)
PWK/PhJ MGP_PWKPhJ_G0019748
protein coding gene Chr13:64967350-64984263 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019571
protein coding gene Chr13:64330786-64347564 (+)
WSB/EiJ MGP_WSBEiJ_G0020051
protein coding gene Chr13:68311085-68327648 (+)



Homology
more
  • Human Ortholog
    C5orf49, chromosome 5 open reading frame 49
  • Vertebrate Orthologs
    7
  • Human Ortholog
    C5orf49, chromosome 5 open reading frame 49
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 134121
    neXtProt AC: NX_A4QMS7
    UniProt: A4QMS7

  • Chr Location
    5p15.31; chr5:7830378-7851490 (-)  GRCh38.p7

Human Diseases
less
  • References
    5 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    281 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Targeted
    1
  • Transgenic
    1
  • Genomic Mutations
    2 involving 1700001L19Rik
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69315 NCBI Gene Model | MGI Sequence Detail 16793 C57BL/6J ±  kb
transcript NM_027035 RefSeq | MGI Sequence Detail 1808 C57BL/6  
polypeptide Q9DAR0 UniProt | EBI | MGI Sequence Detail 182 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR027901 Protein of unknown function DUF4541
Molecular
Reagents
less
  • All nucleic 20
    cDNA 20

    Microarray probesets 2
References
more
  • Summaries
    All 298
    Developmental Gene Expression 1
    Diseases 5
    Phenotypes 281
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:263332 Wang Z, et al., Differential Roles of LTbetaR in Endothelial Cell Subsets for Lymph Node Organogenesis and Maturation. J Immunol. 2018 Jul 1;201(1):69-76

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory