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Pacrg
Gene Detail
Symbol

Name
ID
Pacrg
PARK2 co-regulated
MGI:1916560
Synonyms
1700008H23Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 17
7.80 cM, cytoband A2
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr17:10403012-10840311 bp, - strand
From VEGA annotation of GRCm38

  437300 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:16212  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Pacrg

Human
homologs
Human Homolog PACRG, PARK2 co-regulated
NCBI Gene ID 135138
neXtProt AC  NX_Q96M98
Human Synonyms  GLUP, HAK005771, PARK2CRG
Human Chr (Location)  6q26; chr6:162727125-163315492 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(121) : Gene trapped(121)
Incidental mutations (data from Mutagenetix , APF )
 
Along with altered levele of the Qki transcript, both Pacrg and Park2 are inactivated as a result of a 1.85 Mb deletion in the in the quaking mouse. The quaking mouse is a spontaneous dysmyelinating mutant that demonstrates abnormal locomotion, tremor, and tonic-clonic seizures.
 
Interactions
Pacrg interacts with 77 markers (Mir27a, Mir98, Mir101a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (19 annotations)
Process negative regulation of cell death, spermatid development
Component cell body, cilium, ...
Function actin binding, alpha-tubulin binding, ...
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (66)    Tissues (11)    Images (19)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 66
cDNA source data(20)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(23) Genomic(3) cDNA(20)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000031249 (Evidence)
Ensembl Gene ModelENSMUSG00000037196 (Evidence)
Entrez Gene69310 (Evidence)
UniGene18889
DFCITC1584597
DoTSDT.528459
NIA Mouse Gene IndexU037418
Consensus CDS ProjectCCDS28388.1
International Mouse Knockout Project StatusPacrg
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031249 VEGA Gene Model | MGI Sequence Detail 437300 C57BL/6J ±  kb
transcript OTTMUST00000077414 VEGA | MGI Sequence Detail 1475 Not Applicable 
polypeptide OTTMUSP00000040936 VEGA | MGI Sequence Detail 241 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(1356 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019399 Parkin co-regulated protein
Protein Ontology PR:000012213 parkin coregulated gene protein
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:195051 Thumberger T, et al., Ciliary and non-ciliary expression and function of PACRG during vertebrate development. Cilia. 2012;1(1):13
All references(40)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory