Pacrg
Gene Detail

Symbol Name ID

Pacrg PARK2 co-regulated MGI:1916560

Synonyms

1700008H23Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 17

7.80 cM, cytoband A2
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr17:10403012-10840311 bp, - strand From VEGA annotation of GRCm38   437300 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:16212  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Pacrg

Human homologs

Human Homolog		PACRG, PARK2 co-regulated
NCBI Gene ID		135138
neXtProt AC		NX_Q96M98
Human Synonyms		GLUP, HAK005771, PARK2CRG, RP3-495O10.2
Human Chr (Location)		6q26; chr6:163148164-163736524 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(121) : Gene trapped(121)
 

Along with altered levele of the Qki transcript, both Pacrg and Park2 are inactivated as a result of a 1.85 Mb deletion in the in the quaking mouse. The quaking mouse is a spontaneous dysmyelinating mutant that demonstrates abnormal locomotion, tremor, and tonic-clonic seizures.

 

Gene Ontology (GO) classifications

All GO classifications: (6 annotations)

Process	spermatid development
Component	cell body, cilium, ...
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (4 records)
Data Summary: Results (66)    Tissues (11)    Images (19)
Theiler Stages: 22, 23

Assay Type	Results
RNA in situ	66

cDNA source data(20)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(23) Genomic(3) cDNA(20)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000031249 (Evidence)
Ensembl Gene Model	ENSMUSG00000037196 (Evidence)
Entrez Gene	69310 (Evidence)
UniGene	18889
DFCI	TC1584597
DoTS	DT.528459
NIA Mouse Gene Index	U037418
Consensus CDS Project	CCDS28388.1
International Mouse Knockout Project Status	Pacrg

Sequences

Length	Strain/Species
genomic	OTTMUSG00000031249	VEGA Gene Model | MGI Sequence Detail	437300	C57BL/6J
transcript	OTTMUST00000077414	VEGA | MGI Sequence Detail	1475	Not Applicable
polypeptide	OTTMUSP00000040936	VEGA | MGI Sequence Detail	241	Not Applicable

All sequences(25) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(1091 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR019399	Parkin co-regulated protein
Protein Ontology	PR:000012213	parkin coregulated gene protein

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:195051 Thumberger T, et al., Ciliary and non-ciliary expression and function of PACRG during vertebrate development. Cilia. 2012;1(1):13
All references(40)