1700001L05Rik Gene Detail

Summary

• Symbol
  1700001L05Rik
• Name
  RIKEN cDNA 1700001L05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916541
  NCBI Gene: 69291
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr15:83238048-83251498 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 39.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  300 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916541	lncRNA gene	Chr15:83238048-83251590 (-)
129S1/SvImJ	ENSMUSG00200053858	lncRNA gene	Chr15:80363568-80377007 (-)
129S1/SvImJ	ENSMUSG00200053356	protein coding gene	Chr15:80360654-80377054 (-)
A/J	ENSMUSG00195049765	protein coding gene	Chr15:80286898-80303296 (-)
A/J	ENSMUSG00195052049	lncRNA gene	Chr15:80289812-80303249 (-)
AKR/J	ENSMUSG00220053270	lncRNA gene	Chr15:80332988-80346415 (-)
AKR/J	ENSMUSG00220052162	protein coding gene	Chr15:80330076-80346462 (-)
BALB/cJ	ENSMUSG00180052829	protein coding gene	Chr15:80163837-80180232 (-)
BALB/cJ	ENSMUSG00180054018	lncRNA gene	Chr15:80166749-80180185 (-)
C3H/HeJ	ENSMUSG00175053457	lncRNA gene	Chr15:80477675-80491110 (-)
C3H/HeJ	ENSMUSG00175048534	protein coding gene	Chr15:80474764-80491157 (-)
C57BL/6NJ	ENSMUSG00215051998	protein coding gene	Chr15:80252761-80269158 (-)
C57BL/6NJ	ENSMUSG00215052913	lncRNA gene	Chr15:80255675-80269111 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005103	lincRNA gene	Chr15:77353436-77363272 (-)
CAST/EiJ	ENSTCUG00005048321	lncRNA gene	Chr15:79757793-79771209 (-)
CBA/J	ENSMUSG00210047552	protein coding gene	Chr15:80249751-80266145 (-)
CBA/J	ENSMUSG00210049325	lncRNA gene	Chr15:80252663-80266098 (-)
DBA/2J	ENSMUSG00185051535	lncRNA gene	Chr15:80286225-80299643 (-)
FVB/NJ	ENSMUSG00205052600	lncRNA gene	Chr15:80027924-80041372 (-)
FVB/NJ	ENSMUSG00205046362	protein coding gene	Chr15:80025016-80041419 (-)
JF1/MsJ	ENSUMUG00000056693	lncRNA gene	Chr15:79814579-79828067 (-)
LP/J	ENSMUSG00230045029	protein coding gene	Chr15:83601011-83617407 (-)
LP/J	ENSMUSG00230046242	lncRNA gene	Chr15:83603925-83617360 (-)
NOD/ShiLtJ	ENSMUSG00190053965	lncRNA gene	Chr15:80269796-80283231 (-)
NOD/ShiLtJ	ENSMUSG00190043335	protein coding gene	Chr15:80266884-80283278 (-)
NZO/HlLtJ	ENSMUSG00225047827	protein coding gene	Chr15:83934115-83950499 (-)
NZO/HlLtJ	ENSMUSG00225050422	lncRNA gene	Chr15:83937027-83950452 (-)
PWK/PhJ	ENSLUMG00010052695	lncRNA gene	Chr15:80018421-80031884 (-)
SPRET/EiJ	ENSMSPG00010050948	lncRNA gene	Chr15:81678964-81692369 (-)
WSB/EiJ	ENSIUOG00005049965	lncRNA gene	Chr15:80352541-80365976 (-)

Homology

• Gene Tree
  1700001L05Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving 1700001L05Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  79
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000075511 (Evidence)
• NCBI Gene
  69291

Representative Sequences			Length	Strain/Species
genomic	69291	NCBI Gene Model | MGI Sequence Detail	13451	C57BL/6J
transcript	NR_027980	RefSeq | MGI Sequence Detail	6017	C57BL/6
polypeptide	Q3V153	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 36

  Diseases 1

  Phenotypes 23
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)

TSS for 1700001L05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135661	Chr15:83251498-83251515 (-)	-9 bp
Tssr135660	Chr15:83251468-83251488 (-)	20 bp
Tssr135659	Chr15:83251440-83251451 (-)	52 bp
Tssr135658	Chr15:83251207-83251217 (-)	286 bp
Tssr135657	Chr15:83251172-83251192 (-)	316 bp
Tssr135656	Chr15:83240114-83240117 (-)	11,382 bp