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Spata4 Gene Detail
Summary
  • Symbol
    Spata4
  • Name
    spermatogenesis associated 4
  • Synonyms
    1700001N01Rik, SRG2, TSARG2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916531
    NCBI Gene: 69281
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:54600781-54610098 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 29.27 cM, cytoband B3.1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    105 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916531
protein coding gene Chr8:54600781-54610098 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033613
protein coding gene Chr8:54266315-54276268 (+)
A/J MGP_AJ_G0033595
protein coding gene Chr8:51985464-51994765 (+)
AKR/J MGP_AKRJ_G0033520
protein coding gene Chr8:53465400-53474563 (+)
BALB/cJ MGP_BALBcJ_G0033592
protein coding gene Chr8:52215153-52225659 (+)
C3H/HeJ MGP_C3HHeJ_G0033301
protein coding gene Chr8:54154613-54168780 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034108
protein coding gene Chr8:56274681-56283922 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031056
protein coding gene Chr8:47814311-47823916 (+)
CAST/EiJ MGP_CASTEiJ_G0032627
protein coding gene Chr8:53779876-53792753 (+)
CBA/J MGP_CBAJ_G0033280
protein coding gene Chr8:58336419-58347534 (+)
DBA/2J MGP_DBA2J_G0033433
protein coding gene Chr8:51784964-51794715 (+)
FVB/NJ MGP_FVBNJ_G0033374
protein coding gene Chr8:51124946-51134427 (+)
LP/J MGP_LPJ_G0033521
protein coding gene Chr8:54246320-54255820 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033418
protein coding gene Chr8:59551448-59570014 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034126
protein coding gene Chr8:53751793-53763349 (+)
PWK/PhJ MGP_PWKPhJ_G0032335
protein coding gene Chr8:51322771-51332194 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032171
protein coding gene Chr8:52837108-52851510 (+)
WSB/EiJ MGP_WSBEiJ_G0032743
protein coding gene Chr8:54000397-54010741 (+)



Homology
more
  • Human Ortholog
    SPATA4, spermatogenesis associated 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SPATA4, spermatogenesis associated 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SPEF1B, TSARG2
  • Links
    NCBI Gene ID: 132851
    neXtProt AC: NX_Q8NEY3
    UniProt: Q8NEY3

  • Chr Location
    4q34.2; chr4:176184574-176195671 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 15868
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SPATA4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69281 NCBI Gene Model | MGI Sequence Detail 9318 C57BL/6J ±  kb
transcript NM_133711 RefSeq | MGI Sequence Detail 1057 C57BL/6  
polypeptide Q8K3V1 UniProt | EBI | MGI Sequence Detail 295 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:234235 Miyata H, et al., Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory