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Polr2d Gene Detail
Summary
  • Symbol
    Polr2d
  • Name
    polymerase (RNA) II (DNA directed) polypeptide D
  • Synonyms
    2310002G05Rik, 2610028L19Rik, HSRBP4, RBP4
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916491
    NCBI Gene: 69241
  • Gene Overview
    MyGene.info: POLR2D
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:31789159-31796642 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 17.85 cM, cytoband B2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    39 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916491
protein coding gene Chr18:31789108-31796706 (.)
129S1/SvImJ MGP_129S1SvImJ_G0024217
protein coding gene Chr18:29906174-29913669 (+)
A/J MGP_AJ_G0024182
protein coding gene Chr18:28913887-28921383 (+)
AKR/J MGP_AKRJ_G0024151
protein coding gene Chr18:29715386-29723016 (+)
BALB/cJ MGP_BALBcJ_G0024182
protein coding gene Chr18:29008727-29016210 (+)
C3H/HeJ MGP_C3HHeJ_G0023950
protein coding gene Chr18:29753226-29762563 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024624
protein coding gene Chr18:30969254-30977005 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022066
protein coding gene Chr18:29134318-29143203 (+)
CAST/EiJ MGP_CASTEiJ_G0023425
protein coding gene Chr18:29645198-29652662 (+)
CBA/J MGP_CBAJ_G0023918
protein coding gene Chr18:31929287-31939597 (+)
DBA/2J MGP_DBA2J_G0024050
protein coding gene Chr18:28588622-28596451 (+)
FVB/NJ MGP_FVBNJ_G0024016
protein coding gene Chr18:28292853-28300554 (+)
LP/J MGP_LPJ_G0024131
protein coding gene Chr18:29987719-29995353 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024044
protein coding gene Chr18:33285754-33293250 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024672
protein coding gene Chr18:29580530-29588026 (+)
PWK/PhJ MGP_PWKPhJ_G0023168
protein coding gene Chr18:28741849-28749703 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022977
protein coding gene Chr18:29799446-29806967 (+)
WSB/EiJ MGP_WSBEiJ_G0023488
protein coding gene Chr18:29480924-29488212 (+)



Homology
more
  • Human Ortholog
    POLR2D, RNA polymerase II subunit D
  • Vertebrate Orthologs
    9
  • Human Ortholog
    POLR2D, RNA polymerase II subunit D
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HSRBP4, HSRPB4, RBP4, RPB16
  • Links
    NCBI Gene ID: 5433
    neXtProt AC: NX_O15514
    UniProt: O15514

  • Chr Location
    2q14.3; chr2:127846266-127858155 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024258 Ensembl Gene Model | MGI Sequence Detail 7484 C57BL/6J ±  kb
transcript ENSMUST00000025106 Ensembl | MGI Sequence Detail 956 Not Applicable  
polypeptide ENSMUSP00000025106 Ensembl | MGI Sequence Detail 142 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 83
    cDNA 83

    Microarray probesets 3
Other
Accession IDs
less
MGI:1916771
References
more
  • Summaries
    All 33
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:245369 Yu C, et al., BTG4 is a meiotic cell cycle-coupled maternal-zygotic-transition licensing factor in oocytes. Nat Struct Mol Biol. 2016 May;23(5):387-94

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory