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Pdzph1 Gene Detail
Summary
  • Symbol
    Pdzph1
  • Name
    PDZ and pleckstrin homology domains 1
  • Synonyms
    2610034M16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916489
    NCBI Gene: 69239
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:58878808-58991375 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 30.57 cM, cytoband E1.1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    662 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916489
 protein coding gene Chr17:58878808-58991375 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023967
 protein coding gene Chr17:60665468-60789152 (-)
A/J MGP_AJ_G0023925
 protein coding gene Chr17:58964278-59078531 (-)
AKR/J MGP_AKRJ_G0023894
 protein coding gene Chr17:59727877-59851935 (-)
BALB/cJ MGP_BALBcJ_G0023926
 protein coding gene Chr17:58815556-58932482 (-)
C3H/HeJ MGP_C3HHeJ_G0023690
 protein coding gene Chr17:60475001-60596950 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024372
 protein coding gene Chr17:63002765-63119547 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021818
 protein coding gene Chr17:55353222-55479893 (-)
CAST/EiJ MGP_CASTEiJ_G0023172
 protein coding gene Chr17:60744510-60875827 (-)
CBA/J MGP_CBAJ_G0023666
 protein coding gene Chr17:65522472-65644400 (-)
DBA/2J MGP_DBA2J_G0023794
 protein coding gene Chr17:57651968-57770377 (-)
FVB/NJ MGP_FVBNJ_G0023760
 protein coding gene Chr17:57236748-57349659 (-)
LP/J MGP_LPJ_G0023876
 protein coding gene Chr17:61358820-61480286 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023788
 protein coding gene Chr17:64923010-65049681 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024416
 protein coding gene Chr17:60119462-60232384 (-)
PWK/PhJ MGP_PWKPhJ_G0022918
 protein coding gene Chr17:56979460-57098464 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022729
 protein coding gene Chr17:56826844-56942182 (-)
WSB/EiJ MGP_WSBEiJ_G0023238
 protein coding gene Chr17:60708485-60825234 (-)



Homology
more
  • Human Ortholog
    PDZPH1P, PDZ and pleckstrin homology domains 1, pseudogene
  • Vertebrate Orthologs
    4
  • Human Ortholog
    PDZPH1P, PDZ and pleckstrin homology domains 1, pseudogene
    Orthology source: HGNC
  • Links
    NCBI Gene ID: 105379197

  • Chr Location
    chr5:103430533-103526618 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
    19
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69239 NCBI Gene Model | MGI Sequence Detail 112568 C57BL/6J ±  kb
transcript NM_027001 RefSeq | MGI Sequence Detail 4192 Not Specified  
polypeptide NP_081277 RefSeq | MGI Sequence Detail 1238 Not Specified  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 20
    cDNA 19
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2147022
References
more
  • Summaries
    All 21
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/03/2019
MGI 6.14 		The Jackson Laboratory