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Pdzph1 Gene Detail
Summary
  • Symbol
    Pdzph1
  • Name
    PDZ and pleckstrin homology domains 1
  • Synonyms
    2610034M16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916489
    NCBI Gene: 69239
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:59185803-59298344 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 30.57 cM, cytoband E1.1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4213 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916489
 protein coding gene Chr17:59185803-59298370 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023967
 protein coding gene Chr17:60665468-60789152 (-)
A/J MGP_AJ_G0023925
 protein coding gene Chr17:58964278-59078531 (-)
AKR/J MGP_AKRJ_G0023894
 protein coding gene Chr17:59727877-59851935 (-)
BALB/cJ MGP_BALBcJ_G0023926
 protein coding gene Chr17:58815556-58932482 (-)
C3H/HeJ MGP_C3HHeJ_G0023690
 protein coding gene Chr17:60475001-60596950 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024372
 protein coding gene Chr17:63002765-63119547 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021818
 protein coding gene Chr17:55353222-55479893 (-)
CAST/EiJ MGP_CASTEiJ_G0023172
 protein coding gene Chr17:60744510-60875827 (-)
CBA/J MGP_CBAJ_G0023666
 protein coding gene Chr17:65522472-65644400 (-)
DBA/2J MGP_DBA2J_G0023794
 protein coding gene Chr17:57651968-57770377 (-)
FVB/NJ MGP_FVBNJ_G0023760
 protein coding gene Chr17:57236748-57349659 (-)
LP/J MGP_LPJ_G0023876
 protein coding gene Chr17:61358820-61480286 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023788
 protein coding gene Chr17:64923010-65049681 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024416
 protein coding gene Chr17:60119462-60232384 (-)
PWK/PhJ MGP_PWKPhJ_G0022918
 protein coding gene Chr17:56979460-57098464 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022729
 protein coding gene Chr17:56826844-56942182 (-)
WSB/EiJ MGP_WSBEiJ_G0023238
 protein coding gene Chr17:60708485-60825234 (-)



Homology
more
  • Human Ortholog
    PDZPH1P, PDZ and pleckstrin homology domains 1, pseudogene
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PDZPH1P, PDZ and pleckstrin homology domains 1, pseudogene
  • Links
    NCBI Gene ID: 105379197

  • Chr Location
    chr5:103430533-103526618 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    19
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 69239 NCBI Gene Model | MGI Sequence Detail 112542 C57BL/6J ±  kb
    transcript NM_027001 RefSeq | MGI Sequence Detail 4148 C57BL/6  
    polypeptide NP_081277 RefSeq | MGI Sequence Detail 1233 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 19
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2147022
    References
    more
    • Summaries
      All 23
      Phenotypes 5
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    03/18/2025
    MGI 6.24     		The Jackson Laboratory