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Svbp Gene Detail
Summary
  • Symbol
    Svbp
  • Name
    small vasohibin binding protein
  • Synonyms
    2410005K17Rik, Ccdc23, Svbp
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916466
    NCBI Gene: 69216
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:119195310-119201298 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 55.34 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    22 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916466
protein coding gene Chr4:119195306-119201298 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028690
protein coding gene Chr4:120379230-120385421 (+)
A/J MGP_AJ_G0028650
protein coding gene Chr4:115648759-115654748 (+)
AKR/J MGP_AKRJ_G0028603
protein coding gene Chr4:118159160-118165152 (+)
BALB/cJ MGP_BALBcJ_G0028673
protein coding gene Chr4:116264715-116270490 (+)
C3H/HeJ MGP_C3HHeJ_G0028388
protein coding gene Chr4:119724901-119730676 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029114
protein coding gene Chr4:124949371-124955363 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026391
protein coding gene Chr4:109750289-109756074 (+)
CAST/EiJ MGP_CASTEiJ_G0027819
protein coding gene Chr4:117045888-117052456 (+)
CBA/J MGP_CBAJ_G0028355
protein coding gene Chr4:128329121-128334896 (+)
DBA/2J MGP_DBA2J_G0028502
protein coding gene Chr4:116239456-116245445 (+)
FVB/NJ MGP_FVBNJ_G0028468
protein coding gene Chr4:114753534-114759332 (+)
LP/J MGP_LPJ_G0028602
protein coding gene Chr4:120484470-120490670 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028496
protein coding gene Chr4:133195731-133201509 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029151
protein coding gene Chr4:119232420-119238601 (+)
PWK/PhJ MGP_PWKPhJ_G0027542
protein coding gene Chr4:113160951-113166952 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027368
protein coding gene Chr4:115656123-115661895 (+)
WSB/EiJ MGP_WSBEiJ_G0027899
protein coding gene Chr4:119233135-119239118 (+)



Homology
more
  • Human Ortholog
    SVBP, small vasohibin binding protein
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SVBP, small vasohibin binding protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CCDC23
  • Links
    NCBI Gene ID: 374969
    neXtProt AC: NX_Q8N300
    UniProt: Q8N300

  • Chr Location
    1p34.2; chr1:42807052-42817388 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    2
  • Gene trapped
    3
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    4 involving Svbp
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69216 NCBI Gene Model | MGI Sequence Detail 5989 C57BL/6J ±  kb
transcript NM_001038998 RefSeq | MGI Sequence Detail 822 C57BL/6  
polypeptide Q99LQ4 UniProt | EBI | MGI Sequence Detail 66 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR031378 Small vasohibin-binding protein
Molecular
Reagents
less
  • All nucleic 59
    cDNA 59

    Microarray probesets 2
Other
Accession IDs
less
MGI:2140387
References
more
  • Summaries
    All 31
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/19/2019
MGI 6.13
The Jackson Laboratory