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Chaserr Gene Detail
Summary
  • Symbol
    Chaserr
  • Name
    CHD2 adjacent suppressive regulatory RNA
  • Synonyms
    1810026B05Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1916420
    NCBI Gene: 69170
  • Alliance
    genome feature page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:73189546-73208143 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 42.03 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    429 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916420
 lncRNA gene Chr7:73189546-73211743 (-)
129S1/SvImJ ENSMUSG00200012663
 lncRNA gene Chr7:59955244-59973836 (-)
A/J ENSMUSG00195014149
 lncRNA gene Chr7:64349402-64367998 (-)
AKR/J ENSMUSG00220020476
 lncRNA gene Chr7:57895787-57914388 (-)
BALB/cJ ENSMUSG00180013771
 lncRNA gene Chr7:61058509-61077108 (-)
C3H/HeJ ENSMUSG00175021551
 lncRNA gene Chr7:61856284-61874873 (-)
C57BL/6NJ ENSMUSG00215033914
 lncRNA gene Chr7:60990443-61009039 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013799
 unclassified non-coding RNA gene Chr7:76048998-76068161 (-)
CAST/EiJ ENSTCUG00005004178
 lncRNA gene Chr7:64479859-64498426 (-)
CBA/J ENSMUSG00210024254
 lncRNA gene Chr7:61714991-61733595 (-)
DBA/2J ENSMUSG00185001527
 lncRNA gene Chr7:66037734-66056334 (-)
FVB/NJ ENSMUSG00205030894
 lncRNA gene Chr7:61686882-61705952 (-)
JF1/MsJ ENSUMUG00000031051
 lncRNA gene Chr7:70767178-70785787 (-)
LP/J ENSMUSG00230015494
 lncRNA gene Chr7:72092439-72111034 (-)
NOD/ShiLtJ ENSMUSG00190018961
 lncRNA gene Chr7:61810198-61828791 (-)
NZO/HlLtJ ENSMUSG00225018018
 lncRNA gene Chr7:70360261-70378856 (-)
PWK/PhJ ENSLUMG00010018950
 lncRNA gene Chr7:60312580-60331164 (-)
SPRET/EiJ ENSMSPG00010025324
 lncRNA gene Chr7:60735258-60753740 (-)
WSB/EiJ ENSIUOG00005022132
 lncRNA gene Chr7:62177362-62195930 (-)



Homology
more
  • Human Ortholog
    CHASERR, CHD2 adjacent suppressive regulatory RNA
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CHASERR, CHD2 adjacent suppressive regulatory RNA
  • Synonyms
    LINC01578, NEDFSAB
  • Links
    NCBI Gene ID: 100507217

  • Chr Location
    chr15:92819305-92899701 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 2 alleles in 1 genetic background
    3 phenotypes from multigenic genotypes
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit preweaning lethality. Mice heterozygous for the allele exhibit partial postnatal lethality, reduced body weight, reduced fat mass, malocclusion, and kyphosis.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    626
  • Tissues
    7
  • cDNA Data
    4
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      77
    • RefSeq
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 69170 NCBI Gene Model | MGI Sequence Detail 18598 C57BL/6J ±  kb
    transcript NR_037569 RefSeq | MGI Sequence Detail 5157 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 5
      cDNA 4
      Primer pair 1

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:6430454
    References
    more
    • Summaries
      All 23
      Developmental Gene Expression 1
      Phenotypes 10
    • Earliest
      J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
    • Latest
      J:281371 Rom A, et al., Regulation of CHD2 expression by the Chaserr long noncoding RNA gene is essential for viability. Nat Commun. 2019 Nov 8;10(1):5092
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory