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Snx4 Gene Detail
Summary
  • Symbol
    Snx4
  • Name
    sorting nexin 4
  • Synonyms
    1810036H14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916400
    NCBI Gene: 69150
  • Gene Overview
    MyGene.info: SNX4
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:33251456-33299562 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 23.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    207 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916400
protein coding gene Chr16:33251456-33299562 (.)
129S1/SvImJ MGP_129S1SvImJ_G0022754
protein coding gene Chr16:31431043-31485801 (+)
A/J MGP_AJ_G0022719
protein coding gene Chr16:29935356-29982985 (+)
AKR/J MGP_AKRJ_G0022692
protein coding gene Chr16:30982670-31035853 (+)
BALB/cJ MGP_BALBcJ_G0022721
protein coding gene Chr16:30041267-30091545 (+)
C3H/HeJ MGP_C3HHeJ_G0022486
protein coding gene Chr16:31115078-31166101 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023170
protein coding gene Chr16:32131750-32187849 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020688
protein coding gene Chr16:30274550-30322653 (+)
CAST/EiJ MGP_CASTEiJ_G0022014
protein coding gene Chr16:31260552-31318960 (+)
CBA/J MGP_CBAJ_G0022456
protein coding gene Chr16:33401855-33454019 (+)
DBA/2J MGP_DBA2J_G0022589
protein coding gene Chr16:29747565-29797854 (+)
FVB/NJ MGP_FVBNJ_G0022564
protein coding gene Chr16:29745775-29794108 (+)
LP/J MGP_LPJ_G0022656
protein coding gene Chr16:31177036-31227851 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022583
protein coding gene Chr16:32815819-32870808 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023182
protein coding gene Chr16:30981543-31034059 (+)
PWK/PhJ MGP_PWKPhJ_G0021755
protein coding gene Chr16:30124720-30174811 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021584
protein coding gene Chr16:30792869-30842548 (+)
WSB/EiJ MGP_WSBEiJ_G0022058
protein coding gene Chr16:30952933-31002021 (+)



Homology
more
  • Human Ortholog
    SNX4, sorting nexin 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SNX4, sorting nexin 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATG24B
  • Links
    NCBI Gene ID: 8723
    neXtProt AC: NX_O95219
    UniProt: O95219

  • Chr Location
    3q21.2; chr3:125446644-125520214 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69150 NCBI Gene Model | MGI Sequence Detail 48107 C57BL/6J ±  kb
transcript NM_080557 RefSeq | MGI Sequence Detail 2442 C57BL/6  
polypeptide Q91YJ2 UniProt | EBI | MGI Sequence Detail 450 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 4
Other
Accession IDs
less
MGI:2141860
References
more
  • Summaries
    All 32
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory