About   Help   FAQ
Snx4
Gene Detail
Symbol

Name
ID
Snx4
sorting nexin 4
MGI:1916400
Synonyms
1810036H14Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 16
23.77 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr16:33251456-33299562 bp, + strand
From Ensembl annotation of GRCm38

  48107 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:36143  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Snx4

Human
homologs
Human Homolog SNX4, sorting nexin 4
NCBI Gene ID 8723
neXtProt AC  NX_O95219
Human Synonyms  ATG24B
Human Chr (Location)  3q21.2; chr3:125446644-125520214 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(11) : Gene trapped(8) Targeted(3)
Incidental mutations (data from APF )
Interactions
Snx4 interacts with 226 markers (Mir1a-1, Mir1a-2, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (19 annotations)
Process endocytic recycling, endocytosis, ...
Component cytoplasm, cytoplasmic dynein complex, ...
Function epidermal growth factor receptor binding, insulin receptor binding, ...
External Resources: FuncBase
Expression
cDNA source data(8)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(8)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000022808 (Evidence)
Entrez Gene69150 (Evidence)
DFCITC1623019, TC1613942, TC1574700
DoTSDT.101393321, DT.493982, DT.55173709
NIA Mouse Gene IndexU017037
Consensus CDS ProjectCCDS28129.1
International Mouse Knockout Project StatusSnx4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022808 Ensembl Gene Model | MGI Sequence Detail 48107 C57BL/6J ±  kb
transcript ENSMUST00000023502 Ensembl | MGI Sequence Detail 2442 Not Applicable 
polypeptide ENSMUSP00000023502 Ensembl | MGI Sequence Detail 450 Not Applicable 

For the selected sequences
All sequences(28) RefSeq(3) UniProt(1)
Polymorphisms
SNPs within 2kb(201 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001683 Phox homologous domain
Protein Ontology PR:000015383 sorting nexin-4
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(37)
Other
accession IDs
MGI:2141860

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/18/2014
MGI 5.20
The Jackson Laboratory