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Snx4
Gene Detail
Symbol

Name
ID
Snx4
sorting nexin 4
MGI:1916400
Synonyms
1810036H14Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 16
23.77 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr16:33251456-33299562 bp, + strand
From NCBI annotation of GRCm38

  48107 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:36143  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: SNX4
Gene Tree: Snx4

Human
homologs
SNX4, sorting nexin 4
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 8723
neXtProt AC: NX_O95219

Human Synonyms: ATG24B

Human Chr (Location): 3q21.2; chr3:125446644-125520214 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(11) : Gene trapped(8) Targeted(3)
Incidental mutations (data from APF )
Interactions
Snx4 interacts with 225 markers (Mir1a-1, Mir1a-2, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (22 annotations)
Process endocytic recycling, endocytosis, ...
Component cytoplasm, cytoplasmic dynein complex, ...
Function epidermal growth factor receptor binding, insulin receptor binding, ...
External Resources: FuncBase
Expression
cDNA source data(8)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: GEISHA SNX4 ZFIN snx4    NEW 
Molecular
reagents
All nucleic(8) cDNA(8)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000022808 (Evidence)
Entrez Gene 69150 (Evidence)
DFCI TC1574700, TC1613942, TC1623019
DoTS DT.101393321, DT.493982, DT.55173709
NIA Mouse Gene Index U017037
Consensus CDS Project CCDS28129.1
International Mouse Phenotyping Consortium Status Snx4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 69150 NCBI Gene Model | MGI Sequence Detail 48107 C57BL/6J ±  kb
transcript NM_080557 RefSeq | MGI Sequence Detail 2442 C57BL/6 
polypeptide Q91YJ2 UniProt | EBI | MGI Sequence Detail 450 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(201 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001683 Phox homologous domain
Protein Ontology PR:000015383 sorting nexin-4
Graphical View of Protein Domain Structure
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)
Other
accession IDs
MGI:2141860

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory