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Vstm5 Gene Detail
Summary
  • Symbol
    Vstm5
  • Name
    V-set and transmembrane domain containing 5
  • Synonyms
    2200002K05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916387
    NCBI Gene: 69137
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:15239045-15259416 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 4.72 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    92 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916387
protein coding gene Chr9:15238918-15259421 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034361
protein coding gene Chr9:12216336-12237759 (+)
A/J MGP_AJ_G0034339
protein coding gene Chr9:12153997-12174883 (+)
AKR/J MGP_AKRJ_G0034267
protein coding gene Chr9:12172180-12192437 (+)
BALB/cJ MGP_BALBcJ_G0034333
protein coding gene Chr9:11925041-11945761 (+)
C3H/HeJ MGP_C3HHeJ_G0034044
protein coding gene Chr9:12487026-12508719 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034855
protein coding gene Chr9:12619198-12639289 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031793
protein coding gene Chr9:11423330-11443555 (+)
CAST/EiJ MGP_CASTEiJ_G0033371
protein coding gene Chr9:12323328-12348000 (+)
CBA/J MGP_CBAJ_G0034017
protein coding gene Chr9:13204652-13229455 (+)
DBA/2J MGP_DBA2J_G0034174
protein coding gene Chr9:12014875-12034644 (+)
FVB/NJ MGP_FVBNJ_G0034119
protein coding gene Chr9:11606130-11626352 (+)
LP/J MGP_LPJ_G0034260
protein coding gene Chr9:12320477-12341814 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034163
protein coding gene Chr9:14219300-14243112 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034874
protein coding gene Chr9:12205426-12227913 (+)
PWK/PhJ MGP_PWKPhJ_G0033077
protein coding gene Chr9:12091997-12112497 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032913
protein coding gene Chr9:12305389-12328587 (+)
WSB/EiJ MGP_WSBEiJ_G0033487
protein coding gene Chr9:12045131-12066480 (+)



Homology
more
  • Human Ortholog
    VSTM5, V-set and transmembrane domain containing 5
  • Vertebrate Orthologs
    8
  • Human Ortholog
    VSTM5, V-set and transmembrane domain containing 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C11orf90
  • Links
    NCBI Gene ID: 387804
    neXtProt AC: NX_A8MXK1
    UniProt: A8MXK1

  • Chr Location
    11q21; chr11:93817315-93850653 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031937 Ensembl Gene Model | MGI Sequence Detail 20372 C57BL/6J ±  kb
transcript ENSMUST00000034413 Ensembl | MGI Sequence Detail 1991 Not Applicable  
polypeptide ENSMUSP00000034413 Ensembl | MGI Sequence Detail 199 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 16
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 30
    Developmental Gene Expression 4
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:243411 Rutledge EA, et al., Cellular heterogeneity in the ureteric progenitor niche and distinct profiles of branching morphogenesis in organ development. Development. 2017 Sep 01;144(17):3177-3188

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory