About   Help   FAQ
Vstm5 Gene Detail
Summary
  • Symbol
    Vstm5
  • Name
    V-set and transmembrane domain containing 5
  • Synonyms
    2200002K05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916387
    NCBI Gene: 69137
Location & Maps
more
  • Sequence Map
    Chr9:15239045-15259393 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      20349 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 4.72 cM, cytoband A3
  • Detailed Genetic Map ± 1 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    VSTM5, V-set and transmembrane domain containing 5
  • Vertebrate Orthologs
    8
  • Human Ortholog
    VSTM5, V-set and transmembrane domain containing 5
    Orthology source: HomoloGene
  • Synonyms
    C11orf90
  • Links
    NCBI Gene ID: 387804
    neXtProt AC: NX_A8MXK1

  • Chr Location
    11q21; chr11:93820569-93850502 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    7
  • Gene trapped
    4
  • Targeted
    3
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031937 Ensembl Gene Model | MGI Sequence Detail 20349 C57BL/6J ±  kb
transcript ENSMUST00000034413 Ensembl | MGI Sequence Detail 1968 Not Applicable  
polypeptide ENSMUSP00000034413 Ensembl | MGI Sequence Detail 199 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    92 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000032149 V-set and transmembrane domain-containing protein 5
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR013783 Immunoglobulin-like fold
    IPR003599 Immunoglobulin subtype
    IPR024303 Natural killer cell receptor 2B4, immunoglobulin domain
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:229257 Gu Z, et al., Expression of the immunoglobulin superfamily cell adhesion molecules in the developing spinal cord and dorsal root ganglion. PLoS One. 2015;10(3):e0121550

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
05/24/2016
MGI 6.04
The Jackson Laboratory