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Vstm5 Gene Detail
Summary
  • Symbol
    Vstm5
  • Name
    V-set and transmembrane domain containing 5
  • Synonyms
    2200002K05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916387
    NCBI Gene: 69137
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr9:15239045-15259416 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      20372 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 4.72 cM, cytoband A3
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    VSTM5, V-set and transmembrane domain containing 5
  • Vertebrate Orthologs
    8
  • Human Ortholog
    VSTM5, V-set and transmembrane domain containing 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C11orf90
  • Links
    NCBI Gene ID: 387804
    neXtProt AC: NX_A8MXK1
    UniProt: A8MXK1

  • Chr Location
    11q21; chr11:93817315-93850653 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031937 Ensembl Gene Model | MGI Sequence Detail 20372 C57BL/6J ±  kb
transcript ENSMUST00000034413 Ensembl | MGI Sequence Detail 1991 Not Applicable  
polypeptide ENSMUSP00000034413 Ensembl | MGI Sequence Detail 199 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    92 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Developmental Gene Expression 4
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:243411 Rutledge EA, et al., Cellular heterogeneity in the ureteric progenitor niche and distinct profiles of branching morphogenesis in organ development. Development. 2017 Sep 01;144(17):3177-3188

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/05/2017
MGI 6.11
The Jackson Laboratory