Vps13b
Gene Detail

Symbol Name ID

Vps13b vacuolar protein sorting 13B (yeast) MGI:1916380

Synonyms

1810042B05Rik, 2310042E16Rik, C330002D13Rik, Coh1, mKIAA0532, mKIAA5032

Feature Type

protein coding gene

Genetic Map

Chromosome 15

14.46 cM, cytoband B3.3
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr15:35371546-35931228 bp, + strand From Ensembl annotation of GRCm38   559683 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:49516  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Vps13b

Human homologs

Human Homolog		VPS13B, vacuolar protein sorting 13 homolog B (yeast)
NCBI Gene ID		157680
neXtProt AC		NX_Q7Z7G8
Human Synonyms		CHS1, COH1
Human Chr (Location)		8q22.2; chr8:100025494-100889814 (+)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human VPS13B

Alleles and phenotypes

All alleles(41) : Gene trapped(41)

Gene Ontology (GO) classifications

All GO classifications: (4 annotations)

Process	protein transport, transport
Component	cellular_component
Function	molecular_function

External Resources: FuncBase

Expression

cDNA source data(96)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(96) cDNA(96)
Microarray probesets(5)

Other database links

Ensembl Gene Model	ENSMUSG00000037646 (Evidence)
Entrez Gene	666173 (Evidence)
UniGene	309250
DFCI	TC1590533, TC1591004, TC1601484, TC1612628, TC1619078, TC1646927, TC1649717
DoTS	DT.101712040, DT.103586211, DT.40170634, DT.488601, DT.87029418, DT.91359659, DT.91381215, DT.91386933, DT.99846835
Consensus CDS Project	CCDS49592.1
International Mouse Knockout Project Status	Vps13b

Sequences

Length	Strain/Species
genomic	ENSMUSG00000037646	Ensembl Gene Model | MGI Sequence Detail	559683	C57BL/6J
transcript	ENSMUST00000048646	Ensembl | MGI Sequence Detail	13370	Not Applicable
polypeptide	ENSMUSP00000045490	Ensembl | MGI Sequence Detail	3993	Not Applicable

All sequences(45) RefSeq(2) UniProt(4)

Polymorphisms

SNPs(2420 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR015412	Autophagy-related, C-terminal
InterPro	IPR026847	Vacuolar protein sorting-associated protein 13
InterPro	IPR026854	Vacuolar protein sorting-associated protein 13A N-terminal domain
InterPro	IPR009543	Vacuolar protein sorting-associated protein 13 domain
Protein Ontology	PR:000017320	vacuolar protein sorting-associated protein 13B

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
All references(33)

Other accession IDs

MGI:1923710, MGI:2146315, MGI:2443954