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Vps13b
Gene Detail
 Symbol
Name
ID
Vps13b
vacuolar protein sorting 13B (yeast)
MGI:1916380
Synonyms 1810042B05Rik, 2310042E16Rik, C330002D13Rik, Coh1, mKIAA0532, mKIAA5032
Feature Type protein coding gene
Genetic Map
Chromosome 15
14.46 cM, cytoband B3.3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:35371546-35931228 bp, + strand
From Ensembl annotation of GRCm38

  559683 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:49516  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Vps13b

Human
homologs
Human Homolog VPS13B, vacuolar protein sorting 13 homolog B (yeast)
NCBI Gene ID 157680
neXtProt AC  NX_Q7Z7G8
Human Synonyms  CHS1, COH1
Human Chr (Location)  8q22.2; chr8:99011179-99878219 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human VPS13B
Mutations,
alleles, and
phenotypes
All mutations/alleles(41) : Gene trapped(41)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Vps13b interacts with 320 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process protein transport, transport
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(87)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(87) cDNA(87)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000037646 (Evidence)
Entrez Gene666173 (Evidence)
UniGene309250
DFCITC1590533, TC1591004, TC1601484, TC1612628, TC1619078, TC1646927, TC1649717
DoTSDT.101712040, DT.103586211, DT.40170634, DT.488601, DT.87029418, DT.91359659, DT.91381215, DT.91386933, DT.99846835
Consensus CDS ProjectCCDS49592.1
International Mouse Knockout Project StatusVps13b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000037646 Ensembl Gene Model | MGI Sequence Detail 559683 C57BL/6J ±  kb
transcript ENSMUST00000048646 Ensembl | MGI Sequence Detail 13370 Not Applicable 
polypeptide ENSMUSP00000045490 Ensembl | MGI Sequence Detail 3993 Not Applicable 

For the selected sequences
All sequences(56) RefSeq(13) UniProt(4)
Polymorphisms SNPs within 2kb(3317 from dbSNP Build 137)    SNPs within 2kb including multiple locations(3319)
Protein-related
information
ResourceIDDescription
InterPro IPR015412 Autophagy-related, C-terminal
InterPro IPR026854 Vacuolar protein sorting-associated protein 13A N-terminal domain
InterPro IPR009543 Vacuolar protein sorting-associated protein 13 domain
Protein Ontology PR:000017320 vacuolar protein sorting-associated protein 13B
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
All references(33)
Other
accession IDs
MGI:1923710, MGI:2146315, MGI:2443954

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory